hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-13514033/chunk_1/iprscan-20080813-13514033.nocrc
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Query sequence: pj01570
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 301.4    6.6e-86   1
SM00219                                                  44.9    6.5e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     552   808 ..     1   280 []    44.9  6.5e-14
SM00220    1/1     552   810 ..     1   231 []   301.4  6.6e-86

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 552 to 808: score 44.9, E = 6.5e-14
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...keeFlrEa
                           +LG G +G+Vy G+ +++++  A+K + e  ++  + +++E+
     pj01570   552    TGERLVLGKGTYGVVYAGRDRhtrVRIAIKEIPERDsrfSQPLHEEI 598  

                   kiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLr
                    + ++l  +H+NiV+ lG ++++       + l i mE ++gG+L + Lr
     pj01570   599 ALHRRL--RHKNIVRYLGSASQG-------GYLKIFMEEVPGGSLSSLLR 639  

                   knrpk..lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk.v
                   +  +  + + s+   +  QI +G  YL+++++vHRD+   N+L++   + 
     pj01570   640 SVWGPlkDNESTISFYTRQILQGLGYLHDNHIVHRDIKGDNVLINTFSgL 689  

                   vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl...
                    KIsDFG s+ l                    + +   +  mAPE ++++
     pj01570   690 LKISDFGTSKRLAGI---------TPC----TETFTGTLQYMAPEIIdqg 726  

                   kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGy
                     g +  + D+WS G +  E+ t G +P  +      s++ ++ ++   +
     pj01570   727 PRG-YGKAADIWSLGCTVIEMAT-GRPPFHEL----GSPQAAMFQVGMYK 770  

                   RlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                     p++++         ++e     l+  + dP  R + ++l  +    
     pj01570   771 VHPPMPS-------SLSAEAQAFLLRTFEPDPRLRASAQTLLGDP    808  

SM00220: domain 1 of 1, from 552 to 810: score 301.4, E = 6.6e-86
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.......erilrEi
                           +lGkG++G+Vy +rd++t  + AiK+i++++++ ++ +  Ei
     pj01570   552    TGERLVLGKGTYGVVYAGRDRHTRVRIAIKEIPerdsrfsQPLHEEI 598  

                   kiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrgl
                   +++++ +H+NIV+++++   +++l ++mE ++G  G+L +ll++  ++ +
     pj01570   599 ALHRRlRHKNIVRYLGSASQgGYLKIFMEEVPG--GSLSSLLRSVWGPLK 646  

                   rkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds...hvKla
                       +E+++ fy+rQil++L YLH+++I+HRD+K +N+L+++ ++ +K++
     pj01570   647 ---DNEsTISFYTRQILQGLGYLHDNHIVHRDIKGDNVLINTfsgLLKIS 693  

                   DFGlArql.......ttfvGTpeYmAPEvl.....gYgkpavDiWSlGci
                   DFG +++l + ++ + tf GT+ YmAPE+++++++gYgk a+DiWSlGc+
     pj01570   694 DFGTSKRLagitpctETFTGTLQYMAPEIIdqgprGYGK-AADIWSLGCT 742  

                   lyElltGkpPFp....qldlifkkig...........SpeakdLikklLv
                   ++E++tG+pPF++ ++ ++++f++ +++ +++ +++ S ea  ++ + ++
     pj01570   743 VIEMATGRPPFHelgsPQAAMFQVGMykvhppmpsslSAEAQAFLLRTFE 792  

                   kdPekRlta.eaLedeldikaHPff<-*
                    dP+ R +a+ +L        +Pf+   
     pj01570   793 PDPRLRASAqTLLG-------DPFL    810  

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