hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-18022537/chunk_1/iprscan-20090525-18022537.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj01570y1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.fs Protein kinase domain 253.6 3.7e-73 1 PF00069.15.ls Protein kinase domain 252.9 6.2e-73 1 PF07714.7.fs Protein tyrosine kinase 92.4 9.9e-27 1 PF07714.7.ls Protein tyrosine kinase 85.4 1.6e-22 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07714.7.ls 1/1 701 961 .. 1 272 [] 85.4 1.6e-22 PF00069.15.ls 1/1 704 961 .. 1 287 [] 252.9 6.2e-73 PF00069.15.fs 1/1 708 961 .. 6 287 .] 253.6 3.7e-73 PF07714.7.fs 1/1 708 904 .. 6 218 .. 92.4 9.9e-27 Alignments of top-scoring domains: PF07714.7.ls: domain 1 of 1, from 701 to 961: score 85.4, E = 1.6e-22 *->lklgkk..LGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseee + g+ LG+G +G+Vy G+ + +t++ A+K ++e +++ pj01570y1 701 TETGERlvLGKGTYGVVYAGRDR----HTRVRIAIKEIPE--RDSRF 741 ieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegG + + +E+++ ++l +H+NiVr+lG ++ g+ l i +E ++gG pj01570y1 742 --SQPLHEEIALHRRL-RHKNIVRYLGSASQ-GGY----LKIFMEEVPGG 783 dLldfLrkhregrpLtlkd.Llsf.alQiAkGMeYLesknfvHRDLAARN +L + Lr+ +pL+ ++ +sf +Qi +G+ YL+++++vHRD+ N pj01570y1 784 SLSSLLRSV--WGPLKDNEsTISFyTRQILQGLGYLHDNHIVHRDIKGDN 831 cLVse.nlvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslky +L++ ++ KIsDFG ++ + +++ +++ + mAPE + pj01570y1 832 VLINTfSGLLKISDFGTSKRL-----AgITPCTETFtGTLQYMAPEIIDQ 876 gk..FtskSDVWSFGVlLWEiftlGeqPFYpgm.sneevlellyedGyRL g +++ + D+WS G++ E+ t G++P + +++s++ + ++++ pj01570y1 877 GPrgYGKAADIWSLGCTVIEMAT-GRPP-FHELgSPQAAMFQVGMYKVHP 924 prPenCPdelYdlMlqCWaedPedRPtFsel..veeL<-* p+P ++e +l+ ++dP R + ++l + +L pj01570y1 925 PMPSSLSAEAQAFLLRTFEPDPRLRASAQTLlgDPFL 961 PF00069.15.ls: domain 1 of 1, from 704 to 961: score 252.9, E = 6.2e-73 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr e+l +lG+G++G+Vy ++++ t+ + A+K+i+ r+ + +++ + pj01570y1 704 GERL-VLGKGTYGVVYAGRDRHTRVRIAIKEIPERDSRFSQPLHE-- 747 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei++++rL+H+NIvr++++ +++l + +E ++gG +L+++l+ pj01570y1 748 --EIALHRRLRHKNIVRYLGSASQGGYLKIFMEEVPGG----SLSSLLR- 790 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv + gpl e ++ ++ +Qil+gl YLH+n i+HRD+K +N+L++ pj01570y1 791 -SVWGPLKDNESTISFYTRQILQGLGYLHDNHIVHRDIKGDNVLINTFSG 839 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvll.ggngygtkv + lKi+DFG +k l + + + tf+GT+ YmAPE++ +g +gyg+++ pj01570y1 840 L---LKISDFGTSKRL-AgITPcTETFTGTLQYMAPEIIDqGPRGYGKAA 885 DvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewds D+WSlG++++e++tG+pPF + ++++ ++++++ +++ + p + s pj01570y1 886 DIWSLGCTVIEMATGRPPFHEL----GSPQAAMFQVGMYKVHPPMPSSLS 931 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* ea+ ++ + +++DP R +a+ +l +P++ pj01570y1 932 -------------AEAQAFLLRTFEPDPRLRASAQTLLGDPFL 961 PF00069.15.fs: domain 1 of 1, from 708 to 961: score 253.6, E = 3.7e-73 *->klGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarrlsEiq +lG+G++G+Vy ++++ t+ + A+K+i+ r+ + +++ + Ei+ pj01570y1 708 VLGKGTYGVVYAGRDRHTRVRIAIKEIPERDSRFSQPLHE----EIA 750 ilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylsetrrkg +++rL+H+NIvr++++ +++l + +E ++gG +L+++l+ + g pj01570y1 751 LHRRLRHKNIVRYLGSASQGGYLKIFMEEVPGG----SLSSLLR--SVWG 794 pllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngvvdafl pl e ++ ++ +Qil+gl YLH+n i+HRD+K +N+L++ + l pj01570y1 795 PLKDNESTISFYTRQILQGLGYLHDNHIVHRDIKGDNVLINTFSGL---L 841 KiaDFGlAkklst.sss.lttfvGTpwYmAPEvll.ggngygtkvDvWSl Ki+DFG +k l + + + tf+GT+ YmAPE++ +g +gyg+++D+WSl pj01570y1 842 KISDFGTSKRL-AgITPcTETFTGTLQYMAPEIIDqGPRGYGKAADIWSL 890 GvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsisrse G++++e++tG+pPF + ++++ ++++++ +++ + p + s pj01570y1 891 GCTVIEMATGRPPFHEL----GSPQAAMFQVGMYKVHPPMPSSLS----- 931 frrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* ea+ ++ + +++DP R +a+ +l +P++ pj01570y1 932 --------AEAQAFLLRTFEPDPRLRASAQTLLGDPFL 961 PF07714.7.fs: domain 1 of 1, from 708 to 904: score 92.4, E = 9.9e-27 *->kLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeieredFl +LG+G +G+Vy G+ + +t++ A+K ++e +++ + + pj01570y1 708 VLGKGTYGVVYAGRDR----HTRVRIAIKEIPE--RDSRF--SQPLH 746 rEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdLldfLr +E+++ ++l +H+NiVr+lG ++ g+ l i +E ++gG+L + Lr pj01570y1 747 EEIALHRRL-RHKNIVRYLGSASQ-GGY----LKIFMEEVPGGSLSSLLR 790 khregrpLtlkd.Llsf.alQiAkGMeYLesknfvHRDLAARNcLVse.n + +pL+ ++ +sf +Qi +G+ YL+++++vHRD+ N+L++ + pj01570y1 791 SV--WGPLKDNEsTISFyTRQILQGLGYLHDNHIVHRDIKGDNVLINTfS 838 lvVKIsDFGLaRdiynddyY.vrkkgggk.lPvkWmAPEslkygk..Fts + KIsDFG ++ + +++ +++ + mAPE + g +++ pj01570y1 839 GLLKISDFGTSKRL-----AgITPCTETFtGTLQYMAPEIIDQGPrgYGK 883 kSDVWSFGVlLWEiftlGeqPFY<-* + D+WS G++ E+ t G++P + pj01570y1 884 AADIWSLGCTVIEMAT-GRPP-F 904 //