hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-13580028/chunk_1/iprscan-20080813-13580028.nocrc
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Query sequence: pj01608
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00312                                                 100.5    1.9e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00312    1/1       7   125 ..     1   142 []   100.5  1.9e-25

Alignments of top-scoring domains:
SM00312: domain 1 of 1, from 7 to 125: score 100.5, E = 1.9e-25
                   *->dniaivavveeetsgkkrgdgkhyyyvieietstnedveewtvyRRY
                      d + + +v++++t++k++  +++++++  i+ +++edv+e +v++RY
     pj01608     7    DFLRHYTVSDPRTHPKGY--TEYKVTAQFISKKDPEDVKEVVVWKRY 51   

                   sdFleLhskLlkkfpqek.rrriiPplPekkllgryreraekesmkvkks
                   sdF++Lh +L  ++ ++++r+  +P +P+ +++gr               
     pj01608    52 SDFRKLHGDLAYTHRNLFrRLEEFPAFPRAQVFGR--------------- 86   

                   lnnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess<-*
                      f  ++ie+Rr+g e+ L+  +++P l n    s+ ++eF+      
     pj01608    87 ---FEASVIEERRKGAEDLLRFTVHIPALNN----SPQLKEFFRGG    125  

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