hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-14031442/chunk_1/iprscan-20080813-14031442.nocrc
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Query sequence: pj01621
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00432.11.ls Prenyltransferase and squalene oxidase re   136.8    5.6e-38   3
PF00432.11.fs Prenyltransferase and squalene oxidase re   130.9    2.2e-37   3

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00432.11.fs   1/3     123   166 ..     1    45 []    51.1  4.5e-14
PF00432.11.ls   1/3     123   166 ..     1    45 []    53.1  8.7e-13
PF00432.11.fs   2/3     559   601 ..     1    45 []    40.4  5.9e-11
PF00432.11.ls   2/3     559   601 ..     1    45 []    42.4  1.4e-09
PF00432.11.fs   3/3     611   659 ..     1    45 []    39.3  1.3e-10
PF00432.11.ls   3/3     611   659 ..     1    45 []    41.3  3.1e-09

Alignments of top-scoring domains:
PF00432.11.fs: domain 1 of 3, from 123 to 166: score 51.1, E = 4.5e-14
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                       ++e++v+yl+s Q+pdGG+g+++++  s++++t+ ++++L++lg  
     pj01621   123    GYREEIVRYLRSVQLPDGGWGLHIED-KSTVFGTALNYVSLRILG   166  

                   *
                    
     pj01621     -   -    

PF00432.11.ls: domain 1 of 3, from 123 to 166: score 53.1, E = 8.7e-13
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                       ++e++v+yl+s Q+pdGG+g+++++  s++++t+ ++++L++lg  
     pj01621   123    GYREEIVRYLRSVQLPDGGWGLHIED-KSTVFGTALNYVSLRILG   166  

                   *
                    
     pj01621     -   -    

PF00432.11.fs: domain 2 of 3, from 559 to 601: score 40.4, E = 5.9e-11
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                      ++  + +++ ++ Q++dG++ g++g+ + +ty+t+++l a a++g  
     pj01621   559    ETLTQGLEFCRRQQRADGSWEGSWGV-C-FTYGTWFGLEAFACMG   601  

                   *
                    
     pj01621     -   -    

PF00432.11.ls: domain 2 of 3, from 559 to 601: score 42.4, E = 1.4e-09
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                      ++  + +++ ++ Q++dG++ g++g+ + +ty+t+++l a a++g  
     pj01621   559    ETLTQGLEFCRRQQRADGSWEGSWGV-C-FTYGTWFGLEAFACMG   601  

                   *
                    
     pj01621     -   -    

PF00432.11.fs: domain 3 of 3, from 611 to 659: score 39.3, E = 1.3e-10
                   *->idkeklvdyllscQnpdGGfggrpggc....esdtyytycalaaLal
                        + +++d+lls+Q++dGG+g++ ++c++++++  +++  +  ++a+
     pj01621   611    AEVSRACDFLLSRQMADGGWGEDFESCeerrYVQSAQSQIHNTCWAM 657  

                   lg<-*
                   +g   
     pj01621   658 MG    659  

PF00432.11.ls: domain 3 of 3, from 611 to 659: score 41.3, E = 3.1e-09
                   *->idkeklvdyllscQnpdGGfggrpggc....esdtyytycalaaLal
                        + +++d+lls+Q++dGG+g++ ++c++++++  +++  +  ++a+
     pj01621   611    AEVSRACDFLLSRQMADGGWGEDFESCeerrYVQSAQSQIHNTCWAM 657  

                   lg<-*
                   +g   
     pj01621   658 MG    659  

//