hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-14031442/chunk_1/iprscan-20080813-14031442.nocrc
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Query sequence: pj01621
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
TIGR01787       squalene_cyclas: squalene/oxidosquale  1352.6          0   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
TIGR01787         1/1      77   722 ..     1   716 []  1352.6        0

Alignments of top-scoring domains:
TIGR01787: domain 1 of 1, from 77 to 722: score 1352.6, E = 0
                   *->alrravefllsLQapdGyWaaelegpltllaelVllchIldelDtvl
                      +++++ +f+  LQa+dG+W ++++gpl+ll++l+++ch +    ++l
     pj01621    77    GALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVAR---IPL 120  

                   pagrrekIlrYLrshQneDGGWgLhigGkstlftTveaYvaLkiLGmsaD
                   pag+re+I+rYLrs+Q++DGGWgLhi++kst+f+T+++Yv+L+iLG+++ 
     pj01621   121 PAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGP- 169  

                   GGddPamkrARnfIleqGGaaaspvftKfWLAllgvYpWeGvpplPPEim
                     ddP+++rARn+++++GGa+a+p+++KfWLA+l+vY+WeG+++l+PE++
     pj01621   170 --DDPDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMW 217  

                   LLPkrwPlPiHpaksSYWcrcrmVyLpiVmLCSRqPVyDqKPvygeRlkv
                   L P+ w  P+Hp+++  Wc+cr+VyLp  m  S    y    +y++Rl++
     pj01621   218 LFPD-W-APAHPSTL--WCHCRQVYLP--M--S----Y----CYAVRLSA 251  

                   pkdpLilqLReELYvePdYdsinwektRrevakedlYfDpHvktPLddal
                    +dpL+++LR+ELYve d++si+w ++R++va++ lY+ pH++  L++++
     pj01621   252 AEDPLVQSLRQELYVE-DFASIDWLAQRNNVAPDELYT-PHSW--LLRVV 297  

                   kgllkllyepflleplfrkelrkkAlqwlyEriaaRLNGVdgrntkYisi
                   ++ll+ lye       +++ lr +A q+lyE+i a     d+r+tk isi
     pj01621   298 YALLN-LYEHH-----HSAHLRQRAVQKLYEHIVA-----DDRFTKSISI 336  

                   GgIePPkamlNamlalwfldVpDpndPpafrkhlqriddflwlqvDGmkm
                   G+I+  k+   +ml++w +d + p +  af++h++ri+d+lw ++DGmkm
     pj01621   337 GPIS--KTI--NMLVRWYVD-G-PAS-TAFQEHVSRIPDYLWMGLDGMKM 379  

                   QptNgsqPvWDTafavqALqEVAldsGldlRldefhPaLvKAlEfLlkkQ
                   Q+tNgsq +WDTafa+qAL    l++G +  ++ef  +L+KA+EfL+++Q
     pj01621   380 QGTNGSQ-IWDTAFAIQAL----LEAGGHH-RPEFSSCLQKAHEFLRLSQ 423  

                   IkddayGDwksvyRhnlkPGgWaFsfenqgYPdVdDtavvaLklvLLlle
                   ++d++++++k +yR + k Gg+ Fs++++g+ +V+D++++aLk+vLLl+e
     pj01621   424 VPDNPPDYQK-YYRQMRK-GGFSFSTLDCGW-IVSDCTAEALKAVLLLQE 470  

                   LrdeeivdekvkrdrLrravnvilsMQskNGGfaAydpdntqewLelLNP
                    +++  + e+++r+rL +av+v+l M++ +GGfa+y++++++ +LelLNP
     pj01621   471 -KCPHVT-EHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNP 518  

                   aEvFgDHGiKAmidyePPyadvTarVieaLgaFkkyyPghRkdEIdSnvl
                   +EvFgD  i  midy+  y+++T++V++aL  F k +P hR+ EI+ ++l
     pj01621   519 SEVFGD--I--MIDYT--YVECTSAVMQALKYFHKRFPEHRAAEIR-ETL 561  

                   erAleYLrkeQraDGSWfGrWGVnytYGtgfvLsALAaaGPrkyqnrndC
                   +++le++r+ QraDGSW+G+WGV++tYGt+f+L+A+A++G ++y + ++C
     pj01621   562 TQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMG-QTYRDGTAC 610  

                   pevrkAvefLlskQrpDGGWGEdyfSyedpsYvgrkggdStvsqTgWALi
                   +ev +A++fLls+Q++DGGWGEd++S+e ++Yv+ ++  S+ + T+WA +
     pj01621   611 AEVSRACDFLLSRQMADGGWGEDFESCEERRYVQ-SAQ-SQIHNTCWAMM 658  

                   aLIAageaesdFpeeAieRGikyLlesQrPDGsWpqeyftGvgfPknfyL
                   +L+A++++++    eA+eRG+++Lle+Q+P+G+Wpqe++ Gv++ k++++
     pj01621   659 GLMAVRHPDI----EAQERGVRCLLEKQLPNGDWPQENIAGVFN-KSCAI 703  

                   kYtnYrniFPlwALGRYrk<-*
                   +Yt YrniFP+wALGR+++   
     pj01621   704 SYTSYRNIFPIWALGRFSQ    722  

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