hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-14093199/chunk_1/iprscan-20080813-14093199.nocrc
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Query sequence: pj01663
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01712.9.fs Deoxynucleoside kinase                          44.8    1.7e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01712.9.fs   1/1     136   228 ..     1   103 [.    44.8  1.7e-12

Alignments of top-scoring domains:
PF01712.9.fs: domain 1 of 1, from 136 to 228: score 44.8, E = 1.7e-12
                   *->lQtyfLnsRfkqqlsclalkliaarkevvilERSiysDryiFaknly
                      lQ     sR+ q+ +  al ++++++++v+lERSi+s +++F +++y
     pj01663   136    LQSWLYSSRLLQYSD--ALEHLLTTGQGVVLERSIFS-DFVFLEAMY 179  

                   dkGtmddeeyktYkelydnmlrqldkrPenklspDliIYLkvspetcleR
                     G + +  +++Y+e+      +          p+l+IY++v+ +++ +R
     pj01663   180 NQGFIRKQCVDHYNEVKSVTICDYLP-------PHLVIYIDVPVPEVQRR 222  

                   IkkRgR<-*
                   I+k+g+   
     pj01663   223 IQKKGD    228  

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