hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-14151611/chunk_1/iprscan-20080813-14151611.nocrc
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Query sequence: pj01722
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF06602.5.ls   Myotubularin-related                     256.2    6.2e-74   1
PF06602.5.fs   Myotubularin-related                     254.2    2.4e-73   1
PF02893.10.fs  GRAM domain                               49.7    3.6e-13   1
PF02893.10.ls  GRAM domain                               51.5    2.7e-12   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF02893.10.fs    1/1     152   209 ..     1    82 []    49.7  3.6e-13
PF02893.10.ls    1/1     152   209 ..     1    82 []    51.5  2.7e-12
PF06602.5.fs     1/1     303   420 ..     1   123 []   254.2  2.4e-73
PF06602.5.ls     1/1     303   420 ..     1   123 []   256.2  6.2e-74

Alignments of top-scoring domains:
PF02893.10.fs: domain 1 of 1, from 152 to 209: score 49.7, E = 3.6e-13
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      e +++i+k         + +     y+Cp++++     v+G+l++t+
     pj01722   152    ESIKAIVK---------DVM-----YICPFMGA-----VSGTLTVTD 179  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   + l+F++ +++d+++     l++Pl++i+rvek++   
     pj01722   180 FKLYFKN-VERDPHF----ILDVPLGVISRVEKIG    209  

PF02893.10.ls: domain 1 of 1, from 152 to 209: score 51.5, E = 2.7e-12
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      e +++i+k         + +     y+Cp++++     v+G+l++t+
     pj01722   152    ESIKAIVK---------DVM-----YICPFMGA-----VSGTLTVTD 179  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   + l+F++ +++d+++     l++Pl++i+rvek++   
     pj01722   180 FKLYFKN-VERDPHF----ILDVPLGVISRVEKIG    209  

PF06602.5.fs: domain 1 of 1, from 303 to 420: score 254.2, E = 2.4e-73
                   *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv
                      Ye+C++YPa++vVP+s+ Dd+L kvA+FR++gR+PVLsw+H+e++A+
     pj01722   303    YEFCDTYPAIIVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESQAT 349  

                   IvRcSQPLvGfsgkRckeDEkllkailkanaiDekiqskklyIvDaRprt
                   I+RcSQPLvG+++kRckeDEk+l+ i++ana     qs+kl+I+DaR+++
     pj01722   350 ITRCSQPLVGPNDKRCKEDEKYLQTIMDANA-----QSHKLIIFDARQNS 394  

                   nAlaNrAkGGGyEneenYpnaelvfl<-*
                   +A +N++kGGGyE+e++Ypnaelvfl   
     pj01722   395 VADTNKTKGGGYESESAYPNAELVFL    420  

PF06602.5.ls: domain 1 of 1, from 303 to 420: score 256.2, E = 6.2e-74
                   *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv
                      Ye+C++YPa++vVP+s+ Dd+L kvA+FR++gR+PVLsw+H+e++A+
     pj01722   303    YEFCDTYPAIIVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESQAT 349  

                   IvRcSQPLvGfsgkRckeDEkllkailkanaiDekiqskklyIvDaRprt
                   I+RcSQPLvG+++kRckeDEk+l+ i++ana     qs+kl+I+DaR+++
     pj01722   350 ITRCSQPLVGPNDKRCKEDEKYLQTIMDANA-----QSHKLIIFDARQNS 394  

                   nAlaNrAkGGGyEneenYpnaelvfl<-*
                   +A +N++kGGGyE+e++Ypnaelvfl   
     pj01722   395 VADTNKTKGGGYESESAYPNAELVFL    420  

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