hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-14151611/chunk_1/iprscan-20080813-14151611.nocrc
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Query sequence: pj01722
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00568                                                  52.0      8e-11   1
SM00404                                                  32.1    7.7e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00568     1/1     141   209 ..     1    80 []    52.0    8e-11
SM00404     1/1     434   582 ..     1    92 []    32.1  7.7e-05

Alignments of top-scoring domains:
SM00568: domain 1 of 1, from 141 to 209: score 52.0, E = 8e-11
                   *->ekFrklFkLpeeEkLiadcekeVtysCyLsttgdipvqGrlyiSnnr
                       ++ ++ +L ++E ++a  +k+V y C++++     v G+l +++++
     pj01722   141    AQM-EEAPLFPGESIKAI-VKDVMYICPFMG----AVSGTLTVTDFK 181  

                   lcFrSnlfgkltppqyykvviPLadItrieKst<-*
                   l+F+  +++++ +     +++PL++I+r+eK++   
     pj01722   182 LYFKN-VERDPHF----ILDVPLGVISRVEKIG    209  

SM00404: domain 1 of 1, from 434 to 582: score 32.1, E = 7.7e-05
                   *->tvkhyhytgWpDhvekdsgvPe....dsileflravrk.........
                      ++k   y++  +         ++ ++ + le++r++ ++  +  ++ 
     pj01722   434    KLKEIVYPSIDEA-----RWLSnvdgTHWLEYIRMLLAgavriadki 475  

                   .....PivVHCSAGvGRTGtfvaidillqq....................
                   +++++++vVHCS+G++RT+++ ++ +l+ ++  ++ ++ ++  +++  + 
     pj01722   476 esgktSVVVHCSDGWDRTAQLTSLAMLMLDsyyrtikgfetlvekewisf 525  

                   ........................vdifdtvkelRsqRpgmvqteeQYlF
                   +++   + +++++++ + ++++  + + d+v+++  q p +++ +e +l 
     pj01722   526 ghrfalrvghgndnhadadrspifLQFVDCVWQMTRQFPSAFEFNELFLI 575  

                   lyralle<-*
                    +  +l+   
     pj01722   576 TILDHLY    582  

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