hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-14212013/chunk_1/iprscan-20080813-14212013.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj01732 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00013.19.ls KH domain 809.2 2.2e-240 14 PF00013.19.fs KH domain 795.6 2.6e-236 15 PF07650.7.fs KH domain 19.9 7.9e-05 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00013.19.fs 2/15 168 228 .. 1 73 [] 67.4 2.8e-18 PF00013.19.ls 1/14 168 228 .. 1 73 [] 69.2 1.2e-17 PF00013.19.fs 3/15 240 300 .. 1 73 [] 41.2 7e-11 PF00013.19.ls 2/14 240 300 .. 1 73 [] 43.0 9.5e-10 PF00013.19.ls 3/14 313 373 .. 1 73 [] 46.2 1.1e-10 PF00013.19.fs 4/15 313 373 .. 1 73 [] 44.3 9e-12 PF00013.19.ls 4/14 382 440 .. 1 73 [] 49.2 1.3e-11 PF00013.19.fs 5/15 382 440 .. 1 73 [] 47.4 1.2e-12 PF00013.19.ls 5/14 453 513 .. 1 73 [] 69.2 1.2e-17 PF00013.19.fs 6/15 453 513 .. 1 73 [] 67.4 2.8e-18 PF00013.19.fs 7/15 525 586 .. 1 73 [] 51.2 1e-13 PF00013.19.ls 6/14 525 586 .. 1 73 [] 53.1 8.8e-13 PF00013.19.ls 7/14 599 659 .. 1 73 [] 73.2 7.6e-19 PF00013.19.fs 8/15 599 659 .. 1 73 [] 71.4 2.1e-19 PF00013.19.ls 8/14 671 732 .. 1 73 [] 68.2 2.5e-17 PF00013.19.fs 9/15 671 732 .. 1 73 [] 66.3 5.6e-18 PF00013.19.fs 10/15 745 806 .. 1 73 [] 59.5 4.8e-16 PF00013.19.ls 9/14 745 806 .. 1 73 [] 61.3 2.9e-15 PF00013.19.ls 10/14 818 879 .. 1 73 [] 48.9 1.5e-11 PF00013.19.fs 11/15 818 879 .. 1 73 [] 47.1 1.5e-12 PF00013.19.ls 11/14 891 983 .. 1 73 [] 42.4 1.5e-09 PF00013.19.fs 12/15 891 983 .. 1 73 [] 40.4 1.1e-10 PF00013.19.ls 12/14 990 1050 .. 1 73 [] 53.9 4.9e-13 PF00013.19.fs 13/15 990 1050 .. 1 73 [] 52.1 5.8e-14 PF00013.19.fs 14/15 1070 1133 .. 1 73 [] 65.2 1.2e-17 PF00013.19.ls 13/14 1070 1133 .. 1 73 [] 67.1 5.4e-17 PF00013.19.fs 15/15 1145 1206 .. 1 73 [] 62.5 6.6e-17 PF00013.19.ls 14/14 1145 1206 .. 1 73 [] 64.4 3.5e-16 Alignments of top-scoring domains: PF00013.19.fs: domain 2 of 15, from 168 to 228: score 67.4, E = 2.8e-18 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++++ ip+++++++IGk+G++++ ++ +t +kI+ip+++ pj01732 168 SATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------- 206 plngsgertvtIsGtpeavekAkkli<-* ++++ ++I+Gt+e++ekA+ ++ pj01732 207 ----DPSNQIKITGTKEGIEKARHEV 228 PF00013.19.ls: domain 1 of 14, from 168 to 228: score 69.2, E = 1.2e-17 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++++ ip+++++++IGk+G++++ ++ +t +kI+ip+++ pj01732 168 SATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------- 206 plngsgertvtIsGtpeavekAkkli<-* ++++ ++I+Gt+e++ekA+ ++ pj01732 207 ----DPSNQIKITGTKEGIEKARHEV 228 PF00013.19.fs: domain 3 of 15, from 240 to 300: score 41.2, E = 7e-11 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++r+++ + ++++i G+ + + eI++etG++I+ip++ pj01732 240 VERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPS-------- 278 plngsgertvtIsGtpeavekAkkli<-* + ++ +G++e+ ++A ++i pj01732 279 ----VNRTEIVFTGEKEQLAQAVARI 300 PF00013.19.ls: domain 2 of 14, from 240 to 300: score 43.0, E = 9.5e-10 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++r+++ + ++++i G+ + + eI++etG++I+ip++ pj01732 240 VERLEVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPPS-------- 278 plngsgertvtIsGtpeavekAkkli<-* + ++ +G++e+ ++A ++i pj01732 279 ----VNRTEIVFTGEKEQLAQAVARI 300 PF00013.19.ls: domain 3 of 14, from 313 to 373: score 46.2, E = 1.1e-10 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ti +++ +s+++++IG++G ++eI e+tG++++ip+++ pj01732 313 TIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSD-------- 351 plngsgertvtIsGtpeavekAkkli<-* s ++tv ++G+pe+ +A+ ++ pj01732 352 ----SISETVILRGEPEKLGQALTEV 373 PF00013.19.fs: domain 4 of 15, from 313 to 373: score 44.3, E = 9e-12 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ti +++ +s+++++IG++G ++eI e+tG++++ip+++ pj01732 313 TIAVEVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPSD-------- 351 plngsgertvtIsGtpeavekAkkli<-* s ++tv ++G+pe+ +A+ ++ pj01732 352 ----SISETVILRGEPEKLGQALTEV 373 PF00013.19.ls: domain 4 of 14, from 382 to 440: score 49.2, E = 1.3e-11 *->tirilipsskvGriIGkgGstIkeIreet.GakIdipddgesknlpe + ++ ps ++++iIGk+G+++ +I+++ ++++I++ + + pj01732 382 VSSVAAPSWLHRFIIGKKGQNLAKITQQMpKVHIEFTEGE------- 421 dplngsgertvtIsGtpeavekAkkli<-* + +t++G++e+v+ A+++i pj01732 422 --------DKITLEGPTEDVNVAQEQI 440 PF00013.19.fs: domain 5 of 15, from 382 to 440: score 47.4, E = 1.2e-12 *->tirilipsskvGriIGkgGstIkeIreet.GakIdipddgesknlpe + ++ ps ++++iIGk+G+++ +I+++ ++++I++ + + pj01732 382 VSSVAAPSWLHRFIIGKKGQNLAKITQQMpKVHIEFTEGE------- 421 dplngsgertvtIsGtpeavekAkkli<-* + +t++G++e+v+ A+++i pj01732 422 --------DKITLEGPTEDVNVAQEQI 440 PF00013.19.ls: domain 5 of 14, from 453 to 513: score 69.2, E = 1.2e-17 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++i i++++++++IGk G++I++I+++++++++ip+d pj01732 453 YVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------- 491 plngsgertvtIsGtpeavekAkkli<-* ++++ ++I+G+p++v++Ak+++ pj01732 492 ----EKSNLIRIEGDPQGVQQAKREL 513 PF00013.19.fs: domain 6 of 15, from 453 to 513: score 67.4, E = 2.8e-18 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++i i++++++++IGk G++I++I+++++++++ip+d pj01732 453 YVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------- 491 plngsgertvtIsGtpeavekAkkli<-* ++++ ++I+G+p++v++Ak+++ pj01732 492 ----EKSNLIRIEGDPQGVQQAKREL 513 PF00013.19.fs: domain 7 of 15, from 525 to 586: score 51.2, E = 1e-13 *->tirilipsskvGriIGkgGstIkeIreet.GakIdipddgesknlpe t ++i +++++ iIG +G+ I+eIr++++ + I++pd+ pj01732 525 TKDLIIEQRFHRTIIGQKGERIREIRDKFpEVIINFPDPA------- 564 dplngsgertvtIsGtpeavekAkkli<-* ++++v+++G++ +vek+ k + pj01732 565 -----QKSDIVQLRGPKNEVEKCTKYM 586 PF00013.19.ls: domain 6 of 14, from 525 to 586: score 53.1, E = 8.8e-13 *->tirilipsskvGriIGkgGstIkeIreet.GakIdipddgesknlpe t ++i +++++ iIG +G+ I+eIr++++ + I++pd+ pj01732 525 TKDLIIEQRFHRTIIGQKGERIREIRDKFpEVIINFPDPA------- 564 dplngsgertvtIsGtpeavekAkkli<-* ++++v+++G++ +vek+ k + pj01732 565 -----QKSDIVQLRGPKNEVEKCTKYM 586 PF00013.19.ls: domain 7 of 14, from 599 to 659: score 73.2, E = 7.6e-19 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped +i++ i +++++ iIGkgG++Ik+Iree+++kId+p ++ pj01732 599 SISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAEN-------- 637 plngsgertvtIsGtpeavekAkkli<-* s+++t+ I+G+++++e+A+ +i pj01732 638 ----SNSETIIITGKRANCEAARSRI 659 PF00013.19.fs: domain 8 of 15, from 599 to 659: score 71.4, E = 2.1e-19 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped +i++ i +++++ iIGkgG++Ik+Iree+++kId+p ++ pj01732 599 SISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAEN-------- 637 plngsgertvtIsGtpeavekAkkli<-* s+++t+ I+G+++++e+A+ +i pj01732 638 ----SNSETIIITGKRANCEAARSRI 659 PF00013.19.ls: domain 8 of 14, from 671 to 732: score 68.2, E = 2.5e-17 *->tirilipsskvGriIGkgGstIkeIreet.GakIdipddgesknlpe +++++ip++++ ++IG +G+ I+ I+ee++G++I++p +g pj01732 671 EVEVSIPAKLHNSLIGTKGRLIRSIMEECgGVHIHFPVEG------- 710 dplngsgertvtIsGtpeavekAkkli<-* sg++tv+I+G+ +vekAkk++ pj01732 711 -----SGSDTVVIRGPSSDVEKAKKQL 732 PF00013.19.fs: domain 9 of 15, from 671 to 732: score 66.3, E = 5.6e-18 *->tirilipsskvGriIGkgGstIkeIreet.GakIdipddgesknlpe +++++ip++++ ++IG +G+ I+ I+ee++G++I++p +g pj01732 671 EVEVSIPAKLHNSLIGTKGRLIRSIMEECgGVHIHFPVEG------- 710 dplngsgertvtIsGtpeavekAkkli<-* sg++tv+I+G+ +vekAkk++ pj01732 711 -----SGSDTVVIRGPSSDVEKAKKQL 732 PF00013.19.fs: domain 10 of 15, from 745 to 806: score 59.5, E = 4.8e-16 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped t+ i +++++++IGkgG +I++ r+ tGa++++p + pj01732 745 TVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAE-------- 783 plngsgertvtIsGtpeavekAkkli<-* + +++ +tI+G+++av++A+k++ pj01732 784 ---DKDQDLITIIGKEDAVREAQKEL 806 PF00013.19.ls: domain 9 of 14, from 745 to 806: score 61.3, E = 2.9e-15 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped t+ i +++++++IGkgG +I++ r+ tGa++++p + pj01732 745 TVDIRAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAAE-------- 783 plngsgertvtIsGtpeavekAkkli<-* + +++ +tI+G+++av++A+k++ pj01732 784 ---DKDQDLITIIGKEDAVREAQKEL 806 PF00013.19.ls: domain 10 of 14, from 818 to 879: score 48.9, E = 1.5e-11 *->tirilipsskvGriIGkgGstIkeIreet.GakIdipddgesknlpe + ++l++++++++ ++G++++eI ee++G+ + +p++g pj01732 818 EDSMLVDPKHHRHFVIRRGQVLREIAEEYgGVMVSFPRSG------- 857 dplngsgertvtIsGtpeavekAkkli<-* ++++ vt+ G +++ve+Akk+i pj01732 858 -----TQSDKVTLKGAKDCVEAAKKRI 879 PF00013.19.fs: domain 11 of 15, from 818 to 879: score 47.1, E = 1.5e-12 *->tirilipsskvGriIGkgGstIkeIreet.GakIdipddgesknlpe + ++l++++++++ ++G++++eI ee++G+ + +p++g pj01732 818 EDSMLVDPKHHRHFVIRRGQVLREIAEEYgGVMVSFPRSG------- 857 dplngsgertvtIsGtpeavekAkkli<-* ++++ vt+ G +++ve+Akk+i pj01732 858 -----TQSDKVTLKGAKDCVEAAKKRI 879 PF00013.19.ls: domain 11 of 14, from 891 to 983: score 42.4, E = 1.5e-09 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddg........ t++ ip++++++++G++Gs I++I++++ ++I++pd +++ ++++ pj01732 891 TLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREenavhste 937 ...............esknlpedplngsgertvtIsGtpeavekAkkli< + ++++++ +++++ +++p +p +++ IsG +e++e+Ak+++ pj01732 938 pvvqengdeagegreAKDCDPGSP---RRCDIIIISGRKEKCEAAKEAL 983 -* pj01732 - - PF00013.19.fs: domain 12 of 15, from 891 to 983: score 40.4, E = 1.1e-10 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddg........ t++ ip++++++++G++Gs I++I++++ ++I++pd +++ ++++ pj01732 891 TLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDREenavhste 937 ...............esknlpedplngsgertvtIsGtpeavekAkkli< + ++++++ +++++ +++p +p +++ IsG +e++e+Ak+++ pj01732 938 pvvqengdeagegreAKDCDPGSP---RRCDIIIISGRKEKCEAAKEAL 983 -* pj01732 - - PF00013.19.ls: domain 12 of 14, from 990 to 1050: score 53.9, E = 4.9e-13 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ti++++p ++++++IG +Gs I+++++e+ ++I++p ++ pj01732 990 TIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------- 1028 plngsgertvtIsGtpeavekAkkli<-* +++++ I+G ++ ++Ak+ + pj01732 1029 ----LQSDIIAITGLAANLDRAKAGL 1050 PF00013.19.fs: domain 13 of 15, from 990 to 1050: score 52.1, E = 5.8e-14 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ti++++p ++++++IG +Gs I+++++e+ ++I++p ++ pj01732 990 TIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------- 1028 plngsgertvtIsGtpeavekAkkli<-* +++++ I+G ++ ++Ak+ + pj01732 1029 ----LQSDIIAITGLAANLDRAKAGL 1050 PF00013.19.fs: domain 14 of 15, from 1070 to 1133: score 65.2, E = 1.2e-17 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++++++++++++iIG++G++I +Ir e+ ++I++pd++ d pj01732 1070 KLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKD-------D 1109 plngsgertvtIsGtpeavekAkkli<-* + +++ +tI+G +++ e+A+++i pj01732 1110 G--NQPQDQITITGYEKNTEAARDAI 1133 PF00013.19.ls: domain 13 of 14, from 1070 to 1133: score 67.1, E = 5.4e-17 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++++++++++++iIG++G++I +Ir e+ ++I++pd++ d pj01732 1070 KLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKD-------D 1109 plngsgertvtIsGtpeavekAkkli<-* + +++ +tI+G +++ e+A+++i pj01732 1110 G--NQPQDQITITGYEKNTEAARDAI 1133 PF00013.19.fs: domain 15 of 15, from 1145 to 1206: score 62.5, E = 6.6e-17 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++ + +++ + riIG +G+ I++I++e++++I++p++g pj01732 1145 SEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-------- 1183 plngsgertvtIsGtpeavekAkkli<-* ++ ++vt++G pe+ve+A+++i pj01732 1184 ---APDPNCVTVTGLPENVEEAIDHI 1206 PF00013.19.ls: domain 14 of 14, from 1145 to 1206: score 64.4, E = 3.5e-16 *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped ++ + +++ + riIG +G+ I++I++e++++I++p++g pj01732 1145 SEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-------- 1183 plngsgertvtIsGtpeavekAkkli<-* ++ ++vt++G pe+ve+A+++i pj01732 1184 ---APDPNCVTVTGLPENVEEAIDHI 1206 //