hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-14212013/chunk_1/iprscan-20080813-14212013.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj01732 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00322 844.0 3.1e-249 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00322 1/14 165 233 .. 1 63 [] 65.8 5.3e-15 SM00322 2/14 237 305 .. 1 63 [] 46.7 3.1e-09 SM00322 3/14 310 378 .. 1 63 [] 53.4 3e-11 SM00322 4/14 379 445 .. 1 63 [] 55.6 6.3e-12 SM00322 5/14 450 518 .. 1 63 [] 67.6 1.6e-15 SM00322 6/14 522 591 .. 1 63 [] 54.6 1.3e-11 SM00322 7/14 596 664 .. 1 63 [] 74.5 1.3e-17 SM00322 8/14 668 737 .. 1 63 [] 69.1 5.6e-16 SM00322 9/14 742 811 .. 1 63 [] 55.8 5.8e-12 SM00322 10/14 815 884 .. 1 63 [] 56.0 5e-12 SM00322 11/14 888 988 .. 1 63 [] 65.9 5.2e-15 SM00322 12/14 989 1055 .. 1 63 [] 52.0 7.6e-11 SM00322 13/14 1067 1138 .. 1 63 [] 64.5 1.3e-14 SM00322 14/14 1142 1211 .. 1 63 [] 62.4 5.6e-14 Alignments of top-scoring domains: SM00322: domain 1 of 14, from 165 to 233: score 65.8, E = 5.3e-15 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....ert ++ + +v ip+++++++IGk+G+ ++ +e +t +kI+ip+++++++ pj01732 165 TqASATVaIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRpddpSNQ 211 vtItGppenvekAkelileile<-* + ItG++e++ekA++++l i + pj01732 212 IKITGTKEGIEKARHEVLLISA 233 SM00322: domain 2 of 14, from 237 to 305: score 46.7, E = 3.1e-09 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....ert ++ +++++ ++++ +i G+ + + +i++etg++I+ip+++ + + pj01732 237 KrAVERLeVEKAFHPFIAGPYNRLVGEIMQETGTRINIPPpsvnRTE 283 vtItGppenvekAkelileile<-* ++ tG++e++++A+++i +i e pj01732 284 IVFTGEKEQLAQAVARIKKIYE 305 SM00322: domain 3 of 14, from 310 to 378: score 53.4, E = 3e-11 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....ert +++ti v++ +++++++IG++G+ +++i e tgv+++ip++++ ++t pj01732 310 KtTTIAVeVKKSQHKYVIGPKGNSLQEILERTGVSVEIPPsdsiSET 356 vtItGppenvekAkelileile<-* v ++G+pe++ +A+ +++++ + pj01732 357 VILRGEPEKLGQALTEVYAKAN 378 SM00322: domain 4 of 14, from 379 to 445: score 55.6, E = 6.3e-12 *->a.vtiev.ipadkvGriIGkgGstIkkieeet.gvkIdipg.ertvt + v p+ ++++iIGk+G+++ ki+++ ++v+I++ ++e+++t pj01732 379 SfTVSSVaAPSWLHRFIIGKKGQNLAKITQQMpKVHIEFTEgEDKIT 425 ItGppenvekAkelileile<-* ++Gp e+v +A+e+i+ +++ pj01732 426 LEGPTEDVNVAQEQIEGMVK 445 SM00322: domain 5 of 14, from 450 to 518: score 67.6, E = 1.6e-15 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....ert + +e++i++++++++IGk G++I++i+++++v+++ip+++++++ pj01732 450 RmDYVEInIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPdsekSNL 496 vtItGppenvekAkelileile<-* ++I+G+p++v++Ak+++le+ + pj01732 497 IRIEGDPQGVQQAKRELLELAS 518 SM00322: domain 6 of 14, from 522 to 591: score 54.6, E = 1.3e-11 *->a.vtiev.ipadkvGriIGkgGstIkkieeet.gvkIdipg....er ++ t + i +++++ iIG +G++I++i+++++ v I++p++ +++ pj01732 522 NeRTKDLiIEQRFHRTIIGQKGERIREIRDKFpEVIINFPDpaqkSD 568 tvtItGppenvekAkelileile<-* +v ++Gp+ vek+ ++ +++++ pj01732 569 IVQLRGPKNEVEKCTKYMQKMVA 591 SM00322: domain 7 of 14, from 596 to 664: score 74.5, E = 1.3e-17 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....ert ++++i v+i + +++ iIGkgG++Ikki+ee+++kId+p ++++++t pj01732 596 NsYSISVpIFKQFHKNIIGKGGANIKKIREESNTKIDLPAensnSET 642 vtItGppenvekAkelileile<-* + ItG ++n+e+A+ +il+i + pj01732 643 IIITGKRANCEAARSRILSIQK 664 SM00322: domain 8 of 14, from 668 to 737: score 69.1, E = 5.6e-16 *->a.vtiev.ipadkvGriIGkgGstIkkieeet.gvkIdipg....er + ++ev+ipa+++ ++IG +G+ I++i+ee++gv+I++p ++++++ pj01732 668 NiAEVEVsIPAKLHNSLIGTKGRLIRSIMEECgGVHIHFPVegsgSD 714 tvtItGppenvekAkelileile<-* tv+I+Gp +vekAk+++l + e pj01732 715 TVVIRGPSSDVEKAKKQLLHLAE 737 SM00322: domain 9 of 14, from 742 to 811: score 55.8, E = 5.8e-12 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg.....er ++ t+ ++ +++++++IGkgG I+k+++ tg+++++p ++++ + pj01732 742 KsFTVDIrAKPEYHKFLIGKGGGKIRKVRDSTGARVIFPAaedkdQD 788 tvtItGppenvekAkelileile<-* +tI G +++v++A+++++++++ pj01732 789 LITIIGKEDAVREAQKELEALIQ 811 SM00322: domain 10 of 14, from 815 to 884: score 56.0, E = 5e-12 *->a.vtiev.ipadkvGriIGkgGstIkkieeet.gvkIdipg....er + v+ + ++++++++ + ++G+ +++i ee++gv++ +p++++ ++ pj01732 815 NvVEDSMlVDPKHHRHFVIRRGQVLREIAEEYgGVMVSFPRsgtqSD 861 tvtItGppenvekAkelileile<-* +vt++G +++ve+Ak++i+ei+e pj01732 862 KVTLKGAKDCVEAAKKRIQEIIE 884 SM00322: domain 11 of 14, from 888 to 988: score 65.9, E = 5.2e-15 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....... a+vt+e ip+++++++ G++Gs+I++i++++ v+I++p+++++ + pj01732 888 AqVTLECaIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDreenavh 934 .............................ertvtItGppenvekAkelil ++++ +++++ +++++ ++ +++++++ +++ I+G +e++e+Ake+++ pj01732 935 stepvvqengdeagegreakdcdpgsprrCDIIIISGRKEKCEAAKEALE 984 eile<-* +++ pj01732 985 ALVP 988 SM00322: domain 12 of 14, from 989 to 1055: score 52.0, E = 7.6e-11 *->avtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....ertv vtiev++p d+++++IG +Gs I+k ++e+ v+I++p ++ ++++ pj01732 989 -VTIEVeVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPApelqSDII 1034 tItGppenvekAkelileile<-* ItG +n+ +Ak+ +le+++ pj01732 1035 AITGLAANLDRAKAGLLERVK 1055 SM00322: domain 13 of 14, from 1067 to 1138: score 64.5, E = 1.3e-14 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....... + ++ v+++++++ +iIG++G+ I +i+ e+ v+I++p++++++ + pj01732 1067 RsFKLSVtVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDkddgnqp 1113 ertvtItGppenvekAkelileile<-* + +tItG ++n e+A+++il+i+ pj01732 1114 QDQITITGYEKNTEAARDAILRIVG 1138 SM00322: domain 14 of 14, from 1142 to 1211: score 62.4, E = 5.6e-14 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg.....er v++ v+ +++ ++riIG +G+ I+ki++e++v I++p+++ ++ + pj01732 1142 QmVSEDVpLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQsgapdPN 1188 tvtItGppenvekAkelileile<-* vt+tG penve+A+++il++ e pj01732 1189 CVTVTGLPENVEEAIDHILNLEE 1211 //