hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-19101814/chunk_1/iprscan-20090630-19101814.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj01764s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.ls Myosin head (motor domain) 1139.8 0 1 PF00063.11.fs Myosin head (motor domain) 1137.9 0 1 PF06017.4.ls Myosin tail 275.1 1.3e-79 1 PF06017.4.fs Myosin tail 273.3 4.6e-79 1 PF00018.18.ls SH3 domain 93.0 8.1e-25 1 PF00018.18.fs SH3 domain 91.1 3.1e-24 1 PF07653.7.fs Variant SH3 domain 44.5 3.6e-12 1 PF07653.7.ls Variant SH3 domain 46.2 1e-10 1 PF00612.17.ls IQ calmodulin-binding motif 17.4 0.049 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.ls 1/1 48 706 .. 1 791 [] 1139.8 0 PF00063.11.fs 1/1 48 706 .. 1 791 [] 1137.9 0 PF00612.17.ls 1/1 723 743 .. 1 21 [] 17.4 0.049 PF06017.4.fs 1/1 745 950 .. 1 242 [] 273.3 4.6e-79 PF06017.4.ls 1/1 745 950 .. 1 242 [] 275.1 1.3e-79 PF00018.18.ls 1/1 1081 1135 .] 1 59 [] 93.0 8.1e-25 PF00018.18.fs 1/1 1081 1135 .] 1 59 [] 91.1 3.1e-24 PF07653.7.ls 1/1 1082 1135 .] 1 69 [] 46.2 1e-10 PF07653.7.fs 1/1 1082 1135 .] 1 69 [] 44.5 3.6e-12 Alignments of top-scoring domains: PF00063.11.ls: domain 1 of 1, from 48 to 706: score 1139.8, E = 0 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp v+D+v+L++++E+s+ +NLkkRY+ d I TY+G vL+svNP+k+ p pj01764s1 48 VDDMVLLSKITENSIVENLKKRYM-DDYIFTYIGSVLISVNPFKQMP 93 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA +e+ i++Y G ++E+pPHi+A+Ad++YR+M d+eNQ+++isGESGA pj01764s1 94 YFGEKEIEMYQGAAQYENPPHIYALADNMYRNMIIDRENQCVIISGESGA 143 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT+++K++m+Y+ vsg++ kv ++d ilqsNP+LEA pj01764s1 144 GKTVAAKYIMSYISRVSGGGTKVQ-----------HVKDIILQSNPLLEA 182 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT+RNNNSSRFGK++eIqF +G + GgkI++ LLEKSRVv pj01764s1 183 FGNAKTVRNNNSSRFGKYFEIQFSPGGEP----DGGKISNFLLEKSRVVM 228 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc ++gER+FHIFYQL gasa++ k L+ ts ++Y YL+ sg + pj01764s1 229 RNPGERSFHIFYQLIEGASAEQ-KHSLGITS---MDYYYYLSLSG----S 270 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk y+v d iDD eF++t+ A+++iG+ +eeq +++i+A+ILhLGNi Fk pj01764s1 271 YKV-DDIDDRREFQETLHAMNVIGIFAEEQTLVLQIVAGILHLGNIS-FK 318 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrri.kt + + ++A +e++e l a LLG+++ L+ +L+sr+++++ pj01764s1 319 EVG------NYA---AVESEEF-LAFPAYLLGINQDRLKEKLTSRQMdSK 358 GgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsake g+++e +++ +nveqA y RDALAKa+ R Fd++V+ iNka+++ pj01764s1 359 --WGGKSESIHVTLNVEQACYTRDALAKALHARVFDFLVDSINKAMEKD- 405 QasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaek ++ + IGvLDIyGFEIF +k pj01764s1 406 ------------------------------HEEYNIGVLDIYGFEIF-QK 424 NSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqac N+FEQ+cIN+vNEKLQQ+F+++++k+EQEEY++EgI Wt+I+y ++n+++ pj01764s1 425 NGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEY-FNNKIV 473 idLIEkK.kPpGIlslLDEeCrfPka....tDqtFldKLlqtfsskhprl +dLIE+K +PpGI+s+LD++C +++a +++ Dqt+l+KL + + h pj01764s1 474 CDLIENKvNPPGIMSILDDVCATMHAvgegADQTLLQKLQMQI-GSHE-- 520 thFAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddl hF + + +Fii+HYAG+V Y+ +gf+e N+D+Lf dl pj01764s1 521 -HF-NSW-----------NQGFIIHHYAGKVSYDMDGFCERNRDVLFMDL 557 isllksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksak i+l++sS p++ +LFpe +l pj01764s1 558 IELMQSSEL-PFIKSLFPE-NL---------------------------- 577 lgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPN + kk+++ +T+gs++k + + L+ tL ++ +PH++RCIKPN pj01764s1 578 ------QADKKGRP-TTAGSKIKKQANDLVSTLMKC---TPHYIRCIKPN 617 ekKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlL e Kk++++++s+V+hQ+ +lG+ E +iR+rraG+++R +f++FlqRY +L pj01764s1 618 ETKKPRDWEESRVKHQVEYLGLKE-NIRVRRAGYAYRRIFQKFLQRYAIL 666 apktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR ++ tw p+w g +k+g+ +Lqs n+D++++++G +K+F++ pj01764s1 667 TKATW-----PSWQGEEKQGVLHLLQSV-----NMDSDQFQLGRSKVFIK 706 <-* pj01764s1 - - PF00063.11.fs: domain 1 of 1, from 48 to 706: score 1137.9, E = 0 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp v+D+v+L++++E+s+ +NLkkRY+ d I TY+G vL+svNP+k+ p pj01764s1 48 VDDMVLLSKITENSIVENLKKRYM-DDYIFTYIGSVLISVNPFKQMP 93 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA +e+ i++Y G ++E+pPHi+A+Ad++YR+M d+eNQ+++isGESGA pj01764s1 94 YFGEKEIEMYQGAAQYENPPHIYALADNMYRNMIIDRENQCVIISGESGA 143 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT+++K++m+Y+ vsg++ kv ++d ilqsNP+LEA pj01764s1 144 GKTVAAKYIMSYISRVSGGGTKVQ-----------HVKDIILQSNPLLEA 182 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT+RNNNSSRFGK++eIqF +G + GgkI++ LLEKSRVv pj01764s1 183 FGNAKTVRNNNSSRFGKYFEIQFSPGGEP----DGGKISNFLLEKSRVVM 228 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc ++gER+FHIFYQL gasa++ k L+ ts ++Y YL+ sg + pj01764s1 229 RNPGERSFHIFYQLIEGASAEQ-KHSLGITS---MDYYYYLSLSG----S 270 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk y+v d iDD eF++t+ A+++iG+ +eeq +++i+A+ILhLGNi Fk pj01764s1 271 YKV-DDIDDRREFQETLHAMNVIGIFAEEQTLVLQIVAGILHLGNIS-FK 318 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrri.kt + + ++A +e++e l a LLG+++ L+ +L+sr+++++ pj01764s1 319 EVG------NYA---AVESEEF-LAFPAYLLGINQDRLKEKLTSRQMdSK 358 GgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsake g+++e +++ +nveqA y RDALAKa+ R Fd++V+ iNka+++ pj01764s1 359 --WGGKSESIHVTLNVEQACYTRDALAKALHARVFDFLVDSINKAMEKD- 405 QasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaek ++ + IGvLDIyGFEIF +k pj01764s1 406 ------------------------------HEEYNIGVLDIYGFEIF-QK 424 NSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqac N+FEQ+cIN+vNEKLQQ+F+++++k+EQEEY++EgI Wt+I+y ++n+++ pj01764s1 425 NGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEY-FNNKIV 473 idLIEkK.kPpGIlslLDEeCrfPka....tDqtFldKLlqtfsskhprl +dLIE+K +PpGI+s+LD++C +++a +++ Dqt+l+KL + + h pj01764s1 474 CDLIENKvNPPGIMSILDDVCATMHAvgegADQTLLQKLQMQI-GSHE-- 520 thFAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddl hF + + +Fii+HYAG+V Y+ +gf+e N+D+Lf dl pj01764s1 521 -HF-NSW-----------NQGFIIHHYAGKVSYDMDGFCERNRDVLFMDL 557 isllksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksak i+l++sS p++ +LFpe +l pj01764s1 558 IELMQSSEL-PFIKSLFPE-NL---------------------------- 577 lgsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPN + kk+++ +T+gs++k + + L+ tL ++ +PH++RCIKPN pj01764s1 578 ------QADKKGRP-TTAGSKIKKQANDLVSTLMKC---TPHYIRCIKPN 617 ekKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlL e Kk++++++s+V+hQ+ +lG+ E +iR+rraG+++R +f++FlqRY +L pj01764s1 618 ETKKPRDWEESRVKHQVEYLGLKE-NIRVRRAGYAYRRIFQKFLQRYAIL 666 apktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR ++ tw p+w g +k+g+ +Lqs n+D++++++G +K+F++ pj01764s1 667 TKATW-----PSWQGEEKQGVLHLLQSV-----NMDSDQFQLGRSKVFIK 706 <-* pj01764s1 - - PF00612.17.ls: domain 1 of 1, from 723 to 743: score 17.4, E = 0.049 *->rraaikIQaawRGylaRkryk<-* a +IQ+ wR ++aRk+y pj01764s1 723 DGYARVIQKSWRKFVARKKYV 743 PF06017.4.fs: domain 1 of 1, from 745 to 950: score 273.3, E = 4.6e-79 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase ++++As+++ +KKer+r+S++ R+F+GDY+g+ee +p+lq++v+++ pj01764s1 745 MREEASDLLLNKKERRRNSIN--RNFIGDYIGMEE-HPELQQFVGKR 788 egqiikELRkdFgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkalyl e k++Fad+ V+K++R ++K ++R+LlLT+k+lyl pj01764s1 789 E------------KIDFADT----VTKYDR--RFKGVKRDLLLTPKCLYL 820 vdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvkedla ++r+k+K+gp+K+ ++vlKr+i ++ I svSlS++qDd+f++H pj01764s1 821 IGREKVKQGPDKGLVKEVLKRKIEIERILSVSLSTMQDDIFILH------ 864 kgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsdsi +++D++Le+ +k tE++ +L k y++ t++ +l+++ fs+++ pj01764s1 865 EQEYDSLLESVFK--------TEFLSLLAKRYEEKTQK-QLPLK-FSNTL 904 eyrlkkekwg...pGktktvkfqkdatggsellifKkkkghlvsiapq<- e +lkke+wg+ ++G+++ v+f ++++ + + + ++k vsi+p+ pj01764s1 905 ELKLKKENWGpwsAGGSRQVQFHQGFGDLA--VLKPSNKVLQVSIGPG 950 * pj01764s1 - - PF06017.4.ls: domain 1 of 1, from 745 to 950: score 275.1, E = 1.3e-79 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase ++++As+++ +KKer+r+S++ R+F+GDY+g+ee +p+lq++v+++ pj01764s1 745 MREEASDLLLNKKERRRNSIN--RNFIGDYIGMEE-HPELQQFVGKR 788 egqiikELRkdFgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkalyl e k++Fad+ V+K++R ++K ++R+LlLT+k+lyl pj01764s1 789 E------------KIDFADT----VTKYDR--RFKGVKRDLLLTPKCLYL 820 vdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvkedla ++r+k+K+gp+K+ ++vlKr+i ++ I svSlS++qDd+f++H pj01764s1 821 IGREKVKQGPDKGLVKEVLKRKIEIERILSVSLSTMQDDIFILH------ 864 kgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsdsi +++D++Le+ +k tE++ +L k y++ t++ +l+++ fs+++ pj01764s1 865 EQEYDSLLESVFK--------TEFLSLLAKRYEEKTQK-QLPLK-FSNTL 904 eyrlkkekwg...pGktktvkfqkdatggsellifKkkkghlvsiapq<- e +lkke+wg+ ++G+++ v+f ++++ + + + ++k vsi+p+ pj01764s1 905 ELKLKKENWGpwsAGGSRQVQFHQGFGDLA--VLKPSNKVLQVSIGPG 950 * pj01764s1 - - PF00018.18.ls: domain 1 of 1, from 1081 to 1135: score 93.0, E = 8.1e-25 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++++ALY+Y+a++ dELsF +D+i +++++++ gWW+grl Gk pj01764s1 1081 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPS-GWWTGRLR---GK 1123 eGliPsNYVepv<-* +Gl+P NYV+++ pj01764s1 1124 QGLFPNNYVTKI 1135 PF00018.18.fs: domain 1 of 1, from 1081 to 1135: score 91.1, E = 3.1e-24 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++++ALY+Y+a++ dELsF +D+i +++++++ gWW+grl Gk pj01764s1 1081 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPS-GWWTGRLR---GK 1123 eGliPsNYVepv<-* +Gl+P NYV+++ pj01764s1 1124 QGLFPNNYVTKI 1135 PF07653.7.ls: domain 1 of 1, from 1082 to 1135: score 46.2, E = 1e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++a+ y+a +d++e Ls+ ++d++ +i k+d++gww pj01764s1 1082 QCKALYAYDA-QDTDE------LSFNANDIIDII-----KEDPsGWW 1116 egeslggGrrrRGlvPssaveel<-* g++ +G+ Gl+P+++v ++ pj01764s1 1117 TGRL--RGKQ--GLFPNNYVTKI 1135 PF07653.7.fs: domain 1 of 1, from 1082 to 1135: score 44.5, E = 3.6e-12 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++a+ y+a +d++e Ls+ ++d++ +i k+d++gww pj01764s1 1082 QCKALYAYDA-QDTDE------LSFNANDIIDII-----KEDPsGWW 1116 egeslggGrrrRGlvPssaveel<-* g++ +G+ Gl+P+++v ++ pj01764s1 1117 TGRL--RGKQ--GLFPNNYVTKI 1135 //