hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-19101814/chunk_1/iprscan-20090630-19101814.nocrc
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Query sequence: pj01764s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1356.4          0   1
SM00326                                                  83.0    3.7e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      40   720 ..     1   771 []  1356.4        0
SM00326    1/1    1081  1135 .]     1    58 []    83.0  3.7e-20

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 40 to 720: score 1356.4, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                       ++ k+ gV+DmvlL++++E ++++NLkkRY+ d I+TYiG+vL++v
   pj01764s1    40    SHNVKHSGVDDMVLLSKITENSIVENLKKRYMDDYIFTYIGSVLISV 86   

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NP+kq+ p +++  i++Y+      G  ++E+pPH++A+AD++YrnM  +
   pj01764s1    87 NPFKQM-PYFGEKEIEMYQ------GAAQYENPPHIYALADNMYRNMIID 129  

                   keNQsIiISGESGAGKTEatKkimqYLAavsg...svesvedqiLesNPi
                   +eNQ++iISGESGAGKT+a+K+im Y++ vsg++++v++v+d iL+sNP+
   pj01764s1   130 RENQCVIISGESGAGKTVAAKYIMSYISRVSGggtKVQHVKDIILQSNPL 179  

                   LEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQ
                   LEAFGNAKTvRNnNSSRFGK++eI+F+ +G++ G+kI+n+LLEKSRVV  
   pj01764s1   180 LEAFGNAKTVRNNNSSRFGKYFEIQFSPGGEPDGGKISNFLLEKSRVVMR 229  

                   akgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfank
                   ++gER++HIFYQL +Gas+e+k+ lg++    s ++Y+YL+ +g      
   pj01764s1   230 NPGERSFHIFYQLIEGASAEQKHSLGIT----SMDYYYYLSLSG------ 269  

                   ryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAIL
                         ++vd+iDD  eF+e    tl+Am+v+G+ +eEq  +++i+A+IL
   pj01764s1   270 -----SYKVDDIDDRREFQE----TLHAMNVIGIFAEEQTLVLQIVAGIL 310  

                   HLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtk
                   HLGNi+F+e +   ++aav      +ee l + A+LLg++++ L++ Lt+
   pj01764s1   311 HLGNISFKEVG---NYAAV-----ESEEFLAFPAYLLGINQDRLKEKLTS 352  

                   Rkiktggeg.gsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl
                   R++  +++g+++ i+++lnveqA y+RDALAKa+ +R Fd+LV+ INk++
   pj01764s1   353 RQMDSKWGGkSESIHVTLNVEQACYTRDALAKALHARVFDFLVDSINKAM 402  

                   ....sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQ
                   ++++  y IGVLDIyGFEiF+kN+FEQfCIN++NEKLQQ+F+++++K EQ
   pj01764s1   403 ekdhEEYNIGVLDIYGFEIFQKNGFEQFCINFVNEKLQQIFIELTLKAEQ 452  

                   EEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClf.HA
                   EEY++EGI Wt+I++f  +N++++DLIE+K  +P+GI+s+LD++C + HA
   pj01764s1   453 EEYVQEGIRWTPIEYF--NNKIVCDLIENKV-NPPGIMSILDDVCATmHA 499  

                   qPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFi
                   +++g Dqt+l+KL     + + ++h+hf +              ++ +Fi
   pj01764s1   500 VGEGADQTLLQKL-----QMQIGSHEHFNS--------------WNQGFI 530  

                   ikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqs
                   i+HYAG+V+Y+ +GF+e+N+D+Lf dlieL+qsS  p+i+sLFpe   ++
   pj01764s1   531 IHHYAGKVSYDMDGFCERNRDVLFMDLIELMQSSELPFIKSLFPENLQAD 580  

                   ssaakekssggagksrkagrrepskgtisskkrppTvGsqFk.sLneLme
                                                +k+rp+T+Gs++k+++n+L++
   pj01764s1   581 -----------------------------KKGRPTTAGSKIKkQANDLVS 601  

                   tLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGFP
                   tL++++PH+IRCIKPNe+Kkp+++++s+V+hQ+ ylG+ EniR+RraG++
   pj01764s1   602 TLMKCTPHYIRCIKPNETKKPRDWEESRVKHQVEYLGLKENIRVRRAGYA 651  

                   yRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslglgi
                   yR+ f++FlqRY +L + twp+w+        g +k+++  lLqs++   
   pj01764s1   652 YRRIFQKFLQRYAILTKATWPSWQ--------GEEKQGVLHLLQSVN--- 690  

                   egdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                       +d++++q+G++KvF++ p++l++LEe+Re+   
   pj01764s1   691 ----MDSDQFQLGRSKVFIKAPESLFLLEEMRER    720  

SM00326: domain 1 of 1, from 1081 to 1135: score 83.0, E = 3.7e-20
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      ++++AlY+y+aq+ dELsF+++Dii +++++ +gWw G+l+  Gk+G
   pj01764s1  1081    PQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR--GKQG 1125 

                   lfPsnYVeeie<-*
                   lfP nYV  +    
   pj01764s1  1126 LFPNNYV-TKI    1135 

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