hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-14452882/chunk_1/iprscan-20080813-14452882.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj01912 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02862.8.ls DDHD domain 370.9 1.9e-108 1 PF02862.8.fs DDHD domain 369.1 6.4e-108 1 PF00536.20.fs SAM domain (Sterile alpha motif) 38.2 1.3e-10 1 PF00536.20.ls SAM domain (Sterile alpha motif) 40.2 6.8e-09 1 PF02825.10.fs WWE domain 33.0 8e-09 2 PF02825.10.ls WWE domain 32.9 1.1e-06 1 PF07647.7.fs SAM domain (Sterile alpha motif) 22.9 4.7e-06 1 PF07647.7.ls SAM domain (Sterile alpha motif) 23.0 0.00099 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02825.10.fs 1/2 83 160 .. 1 89 [] 31.0 2.9e-08 PF02825.10.ls 1/1 83 160 .. 1 89 [] 32.9 1.1e-06 PF07647.7.fs 1/1 430 487 .. 1 64 [. 22.9 4.7e-06 PF07647.7.ls 1/1 430 495 .. 1 72 [] 23.0 0.00099 PF00536.20.ls 1/1 431 493 .. 1 65 [] 40.2 6.8e-09 PF00536.20.fs 1/1 431 493 .. 1 65 [] 38.2 1.3e-10 PF02862.8.fs 1/1 543 748 .. 1 276 [] 369.1 6.4e-108 PF02862.8.ls 1/1 543 748 .. 1 276 [] 370.9 1.9e-108 Alignments of top-scoring domains: PF02825.10.fs: domain 1 of 2, from 83 to 160: score 31.0, E = 2.9e-08 *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk s++ p+++ +W+y + d++ +W+p++ ++s+ +E+ay+ +k pj01912 83 SLYEPVSP------HWFYCKIIDSKETWIPFNSEDSQQLEEAYSSGK 123 k..GsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-* +G+V v ++ G +Y++ + ++ ++ +++ ++eVrR pj01912 124 GcnGRV----V-PTDGGRYDVHLGERMRYAVYWD--ELASEVRR 160 PF02825.10.ls: domain 1 of 1, from 83 to 160: score 32.9, E = 1.1e-06 *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk s++ p+++ +W+y + d++ +W+p++ ++s+ +E+ay+ +k pj01912 83 SLYEPVSP------HWFYCKIIDSKETWIPFNSEDSQQLEEAYSSGK 123 k..GsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-* +G+V v ++ G +Y++ + ++ ++ +++ ++eVrR pj01912 124 GcnGRV----V-PTDGGRYDVHLGERMRYAVYWD--ELASEVRR 160 PF07647.7.fs: domain 1 of 1, from 430 to 487: score 22.9, E = 4.7e-06 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ +++++ e L+++ l ++ d+F++ +++ e+l + t dL pj01912 430 MDQGDTPTLEEDLKKLQL-SEFFDIFEKEKVDK-EAL-ALCTDRDL- 472 klalGitsvghRkkilk<-* + ++Gi +g+Rkkil+ pj01912 473 Q-EIGI-PLGPRKKILN 487 PF07647.7.ls: domain 1 of 1, from 430 to 495: score 23.0, E = 0.00099 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ +++++ e L+++ l ++ d+F++ +++ e+l + t dL pj01912 430 MDQGDTPTLEEDLKKLQL-SEFFDIFEKEKVDK-EAL-ALCTDRDL- 472 klalGitsvghRkkilkkiqelkqq<-* + ++Gi +g+Rkkil+ + k + pj01912 473 Q-EIGI-PLGPRKKILNYFSTRKNS 495 PF00536.20.ls: domain 1 of 1, from 431 to 493: score 40.2, E = 6.8e-09 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d+ + ++ e L+++ l++ d F +++++d ++l+++t+ DL+++G pj01912 431 DQGDTPTLEEDLKKLQLSEFFDIF-EKEKVDKEALALCTDRDLQEIG 476 vtllGHrkKIlssIqgLk<-* + lG+rkKIl+ + k pj01912 477 I-PLGPRKKILNYFSTRK 493 PF00536.20.fs: domain 1 of 1, from 431 to 493: score 38.2, E = 1.3e-10 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG d+ + ++ e L+++ l++ d F +++++d ++l+++t+ DL+++G pj01912 431 DQGDTPTLEEDLKKLQLSEFFDIF-EKEKVDKEALALCTDRDLQEIG 476 vtllGHrkKIlssIqgLk<-* + lG+rkKIl+ + k pj01912 477 I-PLGPRKKILNYFSTRK 493 PF02862.8.fs: domain 1 of 1, from 543 to 748: score 369.1, E = 6.4e-108 *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC L++k+e+fFa+GSP+G+flt+Rg +++D+++++p+C pj01912 543 LIYKPEIFFAFGSPIGMFLTVRG-----------LKRIDPNYRFPTC 578 kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep k+f+NI+HP+DPvAYR+EP+vvp ++ ++P++Iph+kgrkr++lel+e+ pj01912 579 KGFFNIYHPFDPVAYRIEPMVVPGVE--FEPMLIPHHKGRKRMHLELREG 626 ltrviadlpqnflsnlqssiksspvltsasgasrkneeeteevkestars ltr+++dl++n+l +l++++ks +t+a++++ +++e++ee++++ pj01912 627 LTRMSMDLKNNLLGSLRMAWKS---FTRAPYPALQASETPEETEAE---- 669 GCSPRmTpapeqtenltemliareeravesqpssfgrsSiektkStaslg +e+++e+ +++++++e+ pj01912 670 ------------PESTSEK--PSDVNTEET-------------------- 685 svnktvaenietapeaskeedlaikvlmskLngtkRIDYvLqePaallaf ++a+kee+l+i+v ++Lng++RIDYvLqe +++++f pj01912 686 -------------SVAVKEEVLPINV--GMLNGGQRIDYVLQE-KPIESF 719 nsYlsalksHasYWeSeDvAlFlLkeiyr<-* n+Yl+al+sH++YWeSeD++l++Lkeiy+ pj01912 720 NEYLFALQSHLCYWESEDTVLLVLKEIYQ 748 PF02862.8.ls: domain 1 of 1, from 543 to 748: score 370.9, E = 1.9e-108 *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC L++k+e+fFa+GSP+G+flt+Rg +++D+++++p+C pj01912 543 LIYKPEIFFAFGSPIGMFLTVRG-----------LKRIDPNYRFPTC 578 kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep k+f+NI+HP+DPvAYR+EP+vvp ++ ++P++Iph+kgrkr++lel+e+ pj01912 579 KGFFNIYHPFDPVAYRIEPMVVPGVE--FEPMLIPHHKGRKRMHLELREG 626 ltrviadlpqnflsnlqssiksspvltsasgasrkneeeteevkestars ltr+++dl++n+l +l++++ks +t+a++++ +++e++ee++++ pj01912 627 LTRMSMDLKNNLLGSLRMAWKS---FTRAPYPALQASETPEETEAE---- 669 GCSPRmTpapeqtenltemliareeravesqpssfgrsSiektkStaslg +e+++e+ +++++++e+ pj01912 670 ------------PESTSEK--PSDVNTEET-------------------- 685 svnktvaenietapeaskeedlaikvlmskLngtkRIDYvLqePaallaf ++a+kee+l+i+v ++Lng++RIDYvLqe +++++f pj01912 686 -------------SVAVKEEVLPINV--GMLNGGQRIDYVLQE-KPIESF 719 nsYlsalksHasYWeSeDvAlFlLkeiyr<-* n+Yl+al+sH++YWeSeD++l++Lkeiy+ pj01912 720 NEYLFALQSHLCYWESEDTVLLVLKEIYQ 748 //