hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-14505513/chunk_1/iprscan-20080813-14505513.nocrc
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Query sequence: pj01914
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00855.8.fs  PWWP domain                               122.0    9.7e-36   1
PF00855.8.ls  PWWP domain                               123.9    4.3e-34   1
PF00145.8.fs  C-5 cytosine-specific DNA methylase        19.7    2.7e-05   2

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00855.8.fs    1/1     319   392 ..     1    86 []   122.0  9.7e-36
PF00855.8.ls    1/1     319   392 ..     1    86 []   123.9  4.3e-34
PF00145.8.fs    2/2     715   774 ..    52   113 ..    19.3  3.5e-05

Alignments of top-scoring domains:
PF00855.8.fs: domain 1 of 1, from 319 to 392: score 122.0, E = 9.7e-36
                   *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr
                       f++G+LVw+K++GF+wWP+r+vs+++t++s+          +++++
     pj01914   319    GFGIGELVWGKLRGFSWWPGRIVSWWMTGRSR----------AAEGT 355  

                   vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-*
                   ++V++Fgd+k+ ++v+ ++l+Pl +s++++fh+++++K+   
     pj01914   356 RWVMWFGDGKF-SVVCVEKLMPL-SSFCSAFHQATYNKQ    392  

PF00855.8.ls: domain 1 of 1, from 319 to 392: score 123.9, E = 4.3e-34
                   *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr
                       f++G+LVw+K++GF+wWP+r+vs+++t++s+          +++++
     pj01914   319    GFGIGELVWGKLRGFSWWPGRIVSWWMTGRSR----------AAEGT 355  

                   vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-*
                   ++V++Fgd+k+ ++v+ ++l+Pl +s++++fh+++++K+   
     pj01914   356 RWVMWFGDGKF-SVVCVEKLMPL-SSFCSAFHQATYNKQ    392  

PF00145.8.fs: domain 2 of 2, from 715 to 774: score 19.3, E = 3.5e-05
                   *->gDItkidikeavedip....iDiLvGGfPCQdFSvAGk.rkGfedtR
                      gD++ ++ k     i + +++D+ +GG PC d S+    rkG   + 
     pj01914   715    GDVRSVTQK----HIQewgpFDLVIGGSPCNDLSIVNPaRKGLYEGT 757  

                   GtrStLFfeiiRiikekkPK<-*
                   G    LFfe+ R++   +PK   
     pj01914   758 G---RLFFEFYRLLHDARPK    774  

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