hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-17534656/chunk_1/iprscan-20090618-17534656.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj01967 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 535.1 6.8e-158 1 PF07714.7.fs Protein tyrosine kinase 533.2 2.5e-157 1 PF00069.15.fs Protein kinase domain 137.8 4.9e-39 2 PF00069.15.ls Protein kinase domain 138.9 1.2e-38 1 PF00047.15.ls Immunoglobulin domain 80.8 4e-21 4 PF00047.15.fs Immunoglobulin domain 73.3 2.3e-19 4 PF07686.7.ls Immunoglobulin V-set domain 13.8 0.002 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.ls 1/2 73 156 .. 1 141 [] 11.7 0.0032 PF00047.15.fs 3/4 271 334 .. 1 65 [] 40.0 3.1e-10 PF00047.15.ls 3/4 271 334 .. 1 65 [] 42.0 1.9e-09 PF00047.15.ls 4/4 466 541 .. 1 65 [] 26.3 0.0001 PF00047.15.fs 4/4 466 541 .. 1 65 [] 24.3 6.3e-06 PF00069.15.fs 1/2 636 732 .. 1 101 [. 56.3 7.4e-16 PF00069.15.ls 1/1 636 964 .. 1 287 [] 138.9 1.2e-38 PF07714.7.fs 1/1 636 964 .. 1 272 [] 533.2 2.5e-157 PF07714.7.ls 1/1 636 964 .. 1 272 [] 535.1 6.8e-158 PF00069.15.fs 2/2 799 964 .. 99 287 .] 81.6 4.8e-23 Alignments of top-scoring domains: PF07686.7.ls: domain 1 of 2, from 73 to 156: score 11.7, E = 0.0032 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++v + + + +++v++G++vtL+C +s + pj01967 73 GIPVIEPSVP------------ELVVKPGATVTLRCVGN----GSVE 103 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++g+ s +W + pj01967 104 WDGPPSPHWTL-YSD----------------------------------- 117 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* +++ L+ +n++ +GtY C + + l + ++L V+ pj01967 118 ----GSSSILSTNNATFQNTGTYRCTEPG-DPLGGSAAIHLYVK 156 PF00047.15.fs: domain 3 of 4, from 271 to 334: score 40.0, E = 3.1e-10 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge + ++Cs+s + ++ +v++++n+++l +++++++ n+ +++ + pj01967 271 GEAAQIVCSAS-SVDVNFDVFLQHNNTkLAiPQQSDFHNNRYQKVLT 316 tsLtitnvtpeDggtYtCvv<-* L++ +v+ +++g+Y+Cv+ pj01967 317 --LNLDQVDFQHAGNYSCVA 334 PF00047.15.ls: domain 3 of 4, from 271 to 334: score 42.0, E = 1.9e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ge + ++Cs+s + ++ +v++++n+++l +++++++ n+ +++ + pj01967 271 GEAAQIVCSAS-SVDVNFDVFLQHNNTkLAiPQQSDFHNNRYQKVLT 316 tsLtitnvtpeDggtYtCvv<-* L++ +v+ +++g+Y+Cv+ pj01967 317 --LNLDQVDFQHAGNYSCVA 334 PF00047.15.ls: domain 4 of 4, from 466 to 541: score 26.3, E = 0.0001 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++s tL C + +g p+++vtWl+ ++++ + +++ + + ++d ++ pj01967 466 NGSGTLLCAA--SGYPQPNVTWLQCSGhTDrCDEAQVLQVWDDPYPE 510 t...........sLtitnvtpeDggtYtCvv<-* ++++ ++ + +t+ t e++ tY C++ pj01967 511 VlsqepfhkvtvQSLLTVETLEHNQTYECRA 541 PF00047.15.fs: domain 4 of 4, from 466 to 541: score 24.3, E = 6.3e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++s tL C + +g p+++vtWl+ ++++ + +++ + + ++d ++ pj01967 466 NGSGTLLCAA--SGYPQPNVTWLQCSGhTDrCDEAQVLQVWDDPYPE 510 t...........sLtitnvtpeDggtYtCvv<-* ++++ ++ + +t+ t e++ tY C++ pj01967 511 VlsqepfhkvtvQSLLTVETLEHNQTYECRA 541 PF00069.15.fs: domain 1 of 2, from 636 to 732: score 56.3, E = 7.4e-16 *->yelleklGsGsfGtVykakhkgtgk.....iVAvKiikkr.kekskk ++++++lG+G+fG+V +a+ g gk++ +VAvK +k ++++k+ pj01967 636 LQFGKTLGAGAFGKVVEATAFGLGKedavlKVAVKMLKSTaHADEKE 682 dktarrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvld E++i+ +L++H+NIv l+++++ ++ + +++Eyc G d pj01967 683 ALMS----ELKIMSHLgQHENIVNLLGACTHGGPVLVITEYCCYG----D 724 Lfdylsetrrk<-* L +l+ rk pj01967 725 LLNFLR---RK 732 PF00069.15.ls: domain 1 of 1, from 636 to 964: score 138.9, E = 1.2e-38 *->yelleklGsGsfGtVykakhkgtgk.....iVAvKiikkr.kekskk ++++++lG+G+fG+V +a+ g gk++ +VAvK +k ++++k+ pj01967 636 LQFGKTLGAGAFGKVVEATAFGLGKedavlKVAVKMLKSTaHADEKE 682 dktarrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvld E++i+ +L++H+NIv l+++++ ++ + +++Eyc G d pj01967 683 ALMS----ELKIMSHLgQHENIVNLLGACTHGGPVLVITEYCCYG----D 724 Lfdyls............................................ L +l+++ + +++ +++++++++ + ++ + +++ +++++ ++++ pj01967 725 LLNFLRrkaeamlgpslspgqdpeggvdyknihlekkyvrrdsgfssqgv 774 ..................e....trrkgpllfsedeakkialQilrgleY ++ + ++ +++++++ +e++ + ++++pl + +++ ++ Q+++g+++ pj01967 775 dtyvemrpvstssndsfsEqdldKEDGRPL--ELRDLLHFSSQVAQGMAF 822 LHsngiiHRDLKPeNILldnngvvdaflKiaDFGlAkklst.ssslttfv L s+++iHRD+ N+Ll ng+v+ Ki+DFGlA+ + ++s++ + pj01967 823 LASKNCIHRDVAARNVLLT-NGHVA---KIGDFGLARD--ImNDSNYIVK 866 GTpw....YmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevq G + + ++mAPE + + y+ +DvWS+G++l+e ++ G P++g pj01967 867 GNARlpvkWMAPESIF-DCVYTVQSDVWSYGILLWEIFSlGLNPYPGI-- 913 ds.ldqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkc ++ +++++k+++ p + ++ +++ c pj01967 914 -LvNSKFYKLVKDGY---QMAQPAFAP-------------KNIYSIMQAC 946 LnkDPskRltaeeilqHPwf<-* +++ P+ R+t+++i+ + pj01967 947 WALEPTHRPTFQQICSF--L 964 PF07714.7.fs: domain 1 of 1, from 636 to 964: score 533.2, E = 2.5e-157 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei l++gk+LG+GaFG+V+++t++g +++ +kVAVK+Lk +a+ +e pj01967 636 LQFGKTLGAGAFGKVVEATAFGlGKEDAVLKVAVKMLKS-TAHADE- 680 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd +e++++E++iM++lG+H+NiV+LlG+ct+ g+P ++++tEy+++Gd pj01967 681 -KEALMSELKIMSHLGQHENIVNLLGACTH-GGP----VLVITEYCCYGD 724 LldfLrkhr......................................... Ll+fLr++ + +++ +++++++++ + ++ + +++ +++++ ++++ pj01967 725 LLNFLRRKAeamlgpslspgqdpeggvdyknihlekkyvrrdsgfssqgv 774 .........................egrpLtlkdLlsfalQiAkGMeYLe ++ + ++ +++++++ ++++ ++++grpL l dLl+f+ Q+A+GM++L+ pj01967 775 dtyvemrpvstssndsfseqdldkeDGRPLELRDLLHFSSQVAQGMAFLA 824 sknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPv skn++HRD+AARN+L+++++v+KI+DFGLaRdi+nd++Y +kg+++lPv pj01967 825 SKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNY-IVKGNARLPV 873 kWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgm.sneevlel kWmAPEs++++++t++SDVWS+G+lLWEif+lG P Ypg+ n+ +++l pj01967 874 KWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNP-YPGIlVNSKFYKL 922 lyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* + +dGy++++P +P+ +Y++M+ CWa +P +RPtF+++ ++L pj01967 923 V-KDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL 964 PF07714.7.ls: domain 1 of 1, from 636 to 964: score 535.1, E = 6.8e-158 *->lklgkkLGeGaFGeVykGtlkg.sgdgteikVAVKtLkeigaseeei l++gk+LG+GaFG+V+++t++g +++ +kVAVK+Lk +a+ +e pj01967 636 LQFGKTLGAGAFGKVVEATAFGlGKEDAVLKVAVKMLKS-TAHADE- 680 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd +e++++E++iM++lG+H+NiV+LlG+ct+ g+P ++++tEy+++Gd pj01967 681 -KEALMSELKIMSHLGQHENIVNLLGACTH-GGP----VLVITEYCCYGD 724 LldfLrkhr......................................... Ll+fLr++ + +++ +++++++++ + ++ + +++ +++++ ++++ pj01967 725 LLNFLRRKAeamlgpslspgqdpeggvdyknihlekkyvrrdsgfssqgv 774 .........................egrpLtlkdLlsfalQiAkGMeYLe ++ + ++ +++++++ ++++ ++++grpL l dLl+f+ Q+A+GM++L+ pj01967 775 dtyvemrpvstssndsfseqdldkeDGRPLELRDLLHFSSQVAQGMAFLA 824 sknfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPv skn++HRD+AARN+L+++++v+KI+DFGLaRdi+nd++Y +kg+++lPv pj01967 825 SKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNY-IVKGNARLPV 873 kWmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgm.sneevlel kWmAPEs++++++t++SDVWS+G+lLWEif+lG P Ypg+ n+ +++l pj01967 874 KWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNP-YPGIlVNSKFYKL 922 lyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* + +dGy++++P +P+ +Y++M+ CWa +P +RPtF+++ ++L pj01967 923 V-KDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL 964 PF00069.15.fs: domain 2 of 2, from 799 to 964: score 81.6, E = 4.8e-23 *->rrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnn ++++pl + +++ ++ Q+++g+++L s+++iHRD+ N+Ll n pj01967 799 EDGRPL--ELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLT-N 842 gvvdaflKiaDFGlAkklst.ssslttfvGTpw....YmAPEvllggngy g+v+ Ki+DFGlA+ + ++s++ + G + + ++mAPE + + y pj01967 843 GHVA---KIGDFGLARD--ImNDSNYIVKGNARlpvkWMAPESIF-DCVY 886 gtkvDvWSlGvilyellt.GkpPFsgevqds.ldqlqlirkilgpplefd + +DvWS+G++l+e ++ G P++g ++ +++++k+++ pj01967 887 TVQSDVWSYGILLWEIFSlGLNPYPGI---LvNSKFYKLVKDGY---QMA 930 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< p + ++ +++ c+++ P+ R+t+++i+ + pj01967 931 QPAFAP-------------KNIYSIMQACWALEPTHRPTFQQICSF--L 964 -* pj01967 - - //