hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-17534656/chunk_1/iprscan-20090618-17534656.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj01967 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00219 472.8 1.6e-137 1 SM00409 111.9 7.4e-29 5 SM00220 103.1 3.3e-26 1 SM00408 50.8 1.8e-10 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/5 81 156 .. 1 58 [] 35.0 1e-05 SM00409 2/5 166 250 .. 1 58 [] 20.3 0.28 SM00409 3/5 263 350 .. 1 58 [] 31.3 0.00013 SM00408 1/2 269 339 .. 1 56 [] 34.9 1.1e-05 SM00409 4/5 362 453 .. 1 58 [] 17.6 1.7 SM00409 5/5 458 558 .. 1 58 [] 7.7 27 SM00408 2/2 464 546 .. 1 56 [] 15.9 0.12 SM00219 1/1 636 964 .. 1 280 [] 472.8 1.6e-137 SM00220 1/1 636 964 .. 1 231 [] 103.1 3.3e-26 Alignments of top-scoring domains: SM00409: domain 1 of 5, from 81 to 156: score 35.0, E = 1e-05 *->pp.vtvkeGesvtLtC.as.titWy.................LtI.n p+++vk+G +vtL+C ++++ W ++++++ + ++++++ L +n pj01967 81 VPeLVVKPGATVTLRCvGNgSVEWDgppsphwtlysdgsssiLSTnN 127 vtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +t++++ GtY+C+ ++ +s+ ++L+V+ pj01967 128 ATFQNT---GTYRCTEPgdPLGGSA--AIHLYVK 156 SM00409: domain 2 of 5, from 166 to 250: score 20.3, E = 0.28 *->pp.vtvkeGesvtLtC.as......titWy................. ++v+v e +++ L+C +++ +++ + ++++ ++++ + ++ pj01967 166 AQeVVVFEDQDALLPClLTdpvleaGVSLVrvrgrplmrhtnysfsp 212 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++tI+++++ s +Y+C a ++ ++ s +++L+V+ pj01967 213 whgFTIhRAKFIQS---QDYQCSALmgGRKVMS-ISIRLKVQ 250 SM00409: domain 3 of 5, from 263 to 350: score 31.3, E = 0.00013 *->pp.vtvkeGesvtLtC.as......titWy................. p +++ +Ge +++ C+as+ + + +++ +++++ +++++ +++ pj01967 263 PAeLVRIRGEAAQIVCsASsvdvnfDVFLQhnntklaipqqsdfhnn 309 .......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + ++ +L++++v ++++ G+Y C+a++ g++s + +V pj01967 310 ryqkvltLNLdQVDFQHA---GNYSCVASnvQGKHST--SMFFRVV 350 SM00408: domain 1 of 2, from 269 to 339: score 34.9, E = 1.1e-05 *->leGqsVtLtCp.asgdpvpnItWlk.gkplp.............sgs + G+++++ C s d + ++ +++++l+ +++++ ++++ ++ pj01967 269 IRGEAAQIVCSaSSVDVNFDVFLQHnNTKLAipqqsdfhnnryqKVL 315 tLtiknvsleDsGlYtCvArNsvg<-* tL++ v + ++G+Y+CvA+N g pj01967 316 TLNLDQVDFQHAGNYSCVASNVQG 339 SM00409: domain 4 of 5, from 362 to 453: score 17.6, E = 1.7 *->pp.vtvkeGesvtLtC.as......titWy................. ++v +Ge ++L+ ++ ++ + W+ ++ +++++ ++ + pj01967 362 NLiQEVTVGEGLNLKVmVEaypglqGFNWTylgpfsdhqpepklana 408 ...........LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl< +++++ +++ +L +++++p+ + G Y a++ g + +++Lt + pj01967 409 ttkdtyrhtftLSLpRLKPSEA---GRYSFLARnPGGWRA-LTFELTLR 453 -* pj01967 - - SM00409: domain 5 of 5, from 458 to 558: score 7.7, E = 27 *->pp.vtvkeGesvtLtC.as.....titWy.................. + ++ +s tL C as+ + +++tW++ ++++++ + + + pj01967 458 VSvIWTFINGSGTLLCaASgypqpNVTWLqcsghtdrcdeaqvlqvw 504 .....................LtI.nvtpeDsesgGtYtCaat..sgsas +++ + ++ + ++ + ++ Lt++ ++ + tY C+a+++ gs+s pj01967 505 ddpypevlsqepfhkvtvqslLTVeTLEHN-----QTYECRAHnsVGSGS 549 seqgttLtVl<-* ++ ++ pj01967 550 W-AFIPISAG 558 SM00408: domain 2 of 2, from 464 to 546: score 15.9, E = 0.12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp................. + +s tL C asg+p pn+tWl + + ++ ++ + + +++ ++ pj01967 464 FINGSGTLLCAASGYPQPNVTWLQcSGHTDrcdeaqvlqvwddpype 510 ...........sgstLtiknvsleDsGlYtCvArNsvg<-* ++++ ++ + s Lt++ + ++ +Y+C+A Nsvg pj01967 511 vlsqepfhkvtVQSLLTVETLEHNQ--TYECRAHNSVG 546 SM00219: domain 1 of 1, from 636 to 964: score 472.8, E = 1.6e-137 *->ltlgkkLGeGaFGeVykGtlk........ieVAVKtLkeda....ke l++gk+LG GaFG+V+++t+ + ++++ ++VAVK+Lk+ a+ ++ke pj01967 636 LQFGKTLGAGAFGKVVEATAFglgkedavLKVAVKMLKSTAhadeKE 682 eFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGd ++++E+kiM++lG +H+NiV+LlG+ct++ +P+++++Ey+++Gd pj01967 683 ALMSELKIMSHLG-QHENIVNLLGACTHG-------GPVLVITEYCCYGD 724 LldyLrknrpk....................................... Ll++Lr++ + +++ +++++++++ + ++ + +++ +++++ ++++ pj01967 725 LLNFLRRKAEAmlgpslspgqdpeggvdyknihlekkyvrrdsgfssqgv 774 .............................lslsdLlsfAlQIAkGMeYLe ++ + ++ +++++++ ++++ +++++++l l+dLl+f+ Q+A+GM++L+ pj01967 775 dtyvemrpvstssndsfseqdldkedgrpLELRDLLHFSSQVAQGMAFLA 824 sknfvHRDLAARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkg skn++HRD AARN+L+++++v+KI+DFGL+Rd+ +d + Y +kg pj01967 825 SKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMND-------SNYIVKG 867 gkggktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpge +++ lP++WmAPEs++d+++t +SDVWS+G+lLWEif+lG PYpg+ pj01967 868 --NAR--LPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI 913 iqqfmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedP + n+ ++++k+Gy + +P+ +P+ +Y++M+ CWa +P pj01967 914 ----LVNSKFYKLVKDGYQMAQPAF--------APKNIYSIMQACWALEP 951 edRPtFselverl<-* RPtF++++++l pj01967 952 THRPTFQQICSFL 964 SM00220: domain 1 of 1, from 636 to 964: score 103.1, E = 3.3e-26 *->YellkklGkGaFGkVylardkk.....tgrlvAiKvik........e +++k+lG GaFGkV a+ + ++++ +vA+K++k++ + +++e pj01967 636 LQFGKTLGAGAFGKVVEATAFGlgkedAVLKVAVKMLKstahadekE 682 rilrEikiLkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllk +++E+ki+++ ++H+NIV+L++++ +++ + +++Eyc GdL+ +l+ pj01967 683 ALMSELKIMSHlgQHENIVNLLGACTHgGPVLVITEYCCY--GDLLNFLR 730 krgrrglr.......................................... ++ l+++ +++++++++ + ++ + +++ +++++ ++++ ++ + pj01967 731 RKAEAMLGpslspgqdpeggvdyknihlekkyvrrdsgfssqgvdtyvem 780 .....................kvlsE.earfyfrQilsaLeYLHsqgIiH ++ +++++++ ++++ +++++++l ++ ++ Q+++++++L s++ iH pj01967 781 rpvstssndsfseqdldkedgRPLELrDLLHFSSQVAQGMAFLASKNCIH 830 RDLKPeNiLLds..hvKlaDFGlArql.........ttfvGTpeYmAPEv RD+ N+LL+++++ K++DFGlAr + ++++ + +mAPE pj01967 831 RDVAARNVLLTNghVAKIGDFGLARDImndsnyivkGNARLPVKWMAPES 880 l...gYgkpavDiWSlGcilyEllt.GkpPFp...qldlifkkig..... + + Y+ +D+WS G++l+E ++ G P+p+ + +k++++++ pj01967 881 IfdcVYTV-QSDVWSYGILLWEIFSlGLNPYPgilVNSKFYKLVKdgyqm 929 ......SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-* + ++ ++++ ++ +P++R+t +++ f+ pj01967 930 aqpafaPKNIYSIMQACWALEPTHRPTFqQICS---------FL 964 //