hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-18083134/chunk_1/iprscan-20090525-18083134.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj02206 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00003.12.ls 7 transmembrane receptor (metabotropic g 360.7 2.2e-105 1 PF00003.12.fs 7 transmembrane receptor (metabotropic g 358.8 8e-105 1 PF01094.18.ls Receptor family ligand binding region 308.1 1.5e-89 1 PF01094.18.fs Receptor family ligand binding region 306.3 5.1e-89 1 PF00084.11.fs Sushi domain (SCR repeat) 44.2 2.2e-10 2 PF00084.11.ls Sushi domain (SCR repeat) 43.0 9.1e-10 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00084.11.fs 2/2 113 170 .. 1 65 [] 37.9 8.9e-09 PF00084.11.ls 2/2 113 170 .. 1 65 [] 39.7 9e-09 PF01094.18.ls 1/1 200 559 .. 1 421 [] 308.1 1.5e-89 PF01094.18.fs 1/1 200 559 .. 1 421 [] 306.3 5.1e-89 PF00003.12.fs 1/1 608 880 .. 1 279 [] 358.8 8e-105 PF00003.12.ls 1/1 608 880 .. 1 279 [] 360.7 2.2e-105 Alignments of top-scoring domains: PF00084.11.fs: domain 2 of 2, from 113 to 170: score 37.9, E = 8.9e-09 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C+++ ++eNG+v ++++ G v ++C++ ++lvGss++ C pj02206 113 CSKSYLTLENGKVFLTgGDLPALD-GARVDFRCDPDFHLVGSSRSIC 158 tedggGgWsppllgelPkC<-* + +Ws p+ P C pj02206 159 SQG---QWSTPK----PHC 170 PF00084.11.ls: domain 2 of 2, from 113 to 170: score 39.7, E = 9e-09 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C+++ ++eNG+v ++++ G v ++C++ ++lvGss++ C pj02206 113 CSKSYLTLENGKVFLTgGDLPALD-GARVDFRCDPDFHLVGSSRSIC 158 tedggGgWsppllgelPkC<-* + +Ws p+ P C pj02206 159 SQG---QWSTPK----PHC 170 PF01094.18.ls: domain 1 of 1, from 200 to 559: score 308.1, E = 1.5e-89 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd +++pA+++A+ed+N++++ +lp+++l+++ +d+++ d+ pj02206 200 ACQPAVEMALEDVNSRRD-ILPDYELKLIHHDSKC----------DP 235 .aavaaaacllkskgVvaiiGPscssvaiavarlanewgiPlisygatap ++a+ + +ll++++++ i+ P+cssv++ va a+ w++ ++syg+++p pj02206 236 gQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSP 285 slsdklknryptfaRtvpsdtkqgaAiadilkhtfgWkrvaviyddddyd +ls+ ++r+ptf+Rt ps+t ++++ ++++++ +gWk++a+i ++ pj02206 286 ALSN--RQRFPTFFRTHPSATLHNPTRVKLFEK-WGWKKIATIQQTTEV- 331 ygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddftall ++ l++le+ +keag+++ ++ +s+ +d++ ++ pj02206 332 -FTST----LDDLEERVKEAGIEITFR------------QSFFSDPAVPV 364 kelkdlikskarvivlcgssddlgllkrqilrqarelGlmsggYvwiltd k lk+ + ar+iv ++++++ r +++++++++l + Yvw+l+ pj02206 365 KNLKR---QDARIIVGLFYETEA----RKVFCEVYKERLFGKKYVWFLIG 407 lwsdsldsqgdgs.dlpwariagadeGlltartfpfqldndkareaakgv +++d ++ d+s ++++++++ a+eG++t+ ++ ++n+++ + + ++ pj02206 408 WYADNWFKIYDPSiNCTVDEMTEAVEGHITTEIV---MLNPANTRSISNM 454 lgitlkpspefqeflerlkk..sdtevnayallaYDAVyllAhAlnealr + +++ ++rlk++++ t+ a+laYDA+++lA Aln++ pj02206 455 TSQEF-----VEKLTKRLKRhpEETGGFQEAPLAYDAIWALALALNKTSG 499 ddpngtaglcnacrdsrvddasnalgglnlg.lmkw.dGsqlleylrnkv ++ +++l +++++++++ q++++++ pj02206 500 GGGRSGVRL-------------------EDFnYNNQtITDQIYRAMNS-S 529 nFeGltGdvqfddnggrrpdyslvilnwdg<-* +FeG++G+v+fd++g r++++ + l+ pj02206 530 SFEGVSGHVVFDASGSRMAWTLIEQLQGGS 559 PF01094.18.fs: domain 1 of 1, from 200 to 559: score 306.3, E = 5.1e-89 *->qvlpAmrlAiediNadggillpgitlgvedddtcsdsalcsslsFdd +++pA+++A+ed+N++++ +lp+++l+++ +d+++ d+ pj02206 200 ACQPAVEMALEDVNSRRD-ILPDYELKLIHHDSKC----------DP 235 .aavaaaacllkskgVvaiiGPscssvaiavarlanewgiPlisygatap ++a+ + +ll++++++ i+ P+cssv++ va a+ w++ ++syg+++p pj02206 236 gQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSP 285 slsdklknryptfaRtvpsdtkqgaAiadilkhtfgWkrvaviyddddyd +ls+ ++r+ptf+Rt ps+t ++++ ++++++ +gWk++a+i ++ pj02206 286 ALSN--RQRFPTFFRTHPSATLHNPTRVKLFEK-WGWKKIATIQQTTEV- 331 ygeggcYFtlealedalkeaggkvvavAqasdvvvvsevissdddftall ++ l++le+ +keag+++ ++ +s+ +d++ ++ pj02206 332 -FTST----LDDLEERVKEAGIEITFR------------QSFFSDPAVPV 364 kelkdlikskarvivlcgssddlgllkrqilrqarelGlmsggYvwiltd k lk+ + ar+iv ++++++ r +++++++++l + Yvw+l+ pj02206 365 KNLKR---QDARIIVGLFYETEA----RKVFCEVYKERLFGKKYVWFLIG 407 lwsdsldsqgdgs.dlpwariagadeGlltartfpfqldndkareaakgv +++d ++ d+s ++++++++ a+eG++t+ ++ ++n+++ + + ++ pj02206 408 WYADNWFKIYDPSiNCTVDEMTEAVEGHITTEIV---MLNPANTRSISNM 454 lgitlkpspefqeflerlkk..sdtevnayallaYDAVyllAhAlnealr + +++ ++rlk++++ t+ a+laYDA+++lA Aln++ pj02206 455 TSQEF-----VEKLTKRLKRhpEETGGFQEAPLAYDAIWALALALNKTSG 499 ddpngtaglcnacrdsrvddasnalgglnlg.lmkw.dGsqlleylrnkv ++ +++l +++++++++ q++++++ pj02206 500 GGGRSGVRL-------------------EDFnYNNQtITDQIYRAMNS-S 529 nFeGltGdvqfddnggrrpdyslvilnwdg<-* +FeG++G+v+fd++g r++++ + l+ pj02206 530 SFEGVSGHVVFDASGSRMAWTLIEQLQGGS 559 PF00003.12.fs: domain 1 of 1, from 608 to 880: score 358.8, E = 8e-105 *->lvalAvlGLivlTlfVlvvFvkhrdTPiVKAsnreLSYlLLiglilc +++l+ lG ivl++++l++++++ + +++++s+++L++l +g++l pj02206 608 VSVLSSLG-IVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTAVGCSLA 653 flcsflFIgkG.tv.ekPsewsCiLRrilfGlgFtlcySalLaKTirVlr + +f ++++G ++++++++++C++R +l+GlgF+l y+++++K ++V+ pj02206 654 LAAVFPLGLDGyHIgRNQFPFVCQARLWLLGLGFSLGYGSMFTKIWWVHT 703 aFrkatkpgsgqrrkfispwaqvlivliltliQviicviWLvvePPrpdk +F+k ++++++ rk+++pw+++++v++l++++v+ ++iW++v+P+++++ pj02206 704 VFTKKEEKKEW--RKTLEPWKLYATVGLLVGMDVLTLAIWQIVDPLHRTI 751 dihsekekeedeDvsiapiileCnkgsv.vaFvvvLgYlglLavlcfflA ++ ++e +ed+Dvsi+p++++C+++++++++++++gY+glL++l++flA pj02206 752 ETFAKEEPKEDIDVSILPQLEHCSSRKMnTWLGIFYGYKGLLLLLGIFLA 801 fltRklPvdnFNEAKfItFSMYNvltfCiVWvAFiPaYlstpgsaedykv ++t+ +++++ N+++++++++YNv + C++ +++ ++ s+++ pj02206 802 YETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTMILSSQQD------A 845 qvaveifsIlaSStglLgciFaPKcYIILfkPekn<-* ++a+ ++I++SS+++L+++F+PK+ ++++ e++ pj02206 846 AFAFASLAIVFSSYITLVVLFVPKMRRLITRGEWQ 880 PF00003.12.ls: domain 1 of 1, from 608 to 880: score 360.7, E = 2.2e-105 *->lvalAvlGLivlTlfVlvvFvkhrdTPiVKAsnreLSYlLLiglilc +++l+ lG ivl++++l++++++ + +++++s+++L++l +g++l pj02206 608 VSVLSSLG-IVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTAVGCSLA 653 flcsflFIgkG.tv.ekPsewsCiLRrilfGlgFtlcySalLaKTirVlr + +f ++++G ++++++++++C++R +l+GlgF+l y+++++K ++V+ pj02206 654 LAAVFPLGLDGyHIgRNQFPFVCQARLWLLGLGFSLGYGSMFTKIWWVHT 703 aFrkatkpgsgqrrkfispwaqvlivliltliQviicviWLvvePPrpdk +F+k ++++++ rk+++pw+++++v++l++++v+ ++iW++v+P+++++ pj02206 704 VFTKKEEKKEW--RKTLEPWKLYATVGLLVGMDVLTLAIWQIVDPLHRTI 751 dihsekekeedeDvsiapiileCnkgsv.vaFvvvLgYlglLavlcfflA ++ ++e +ed+Dvsi+p++++C+++++++++++++gY+glL++l++flA pj02206 752 ETFAKEEPKEDIDVSILPQLEHCSSRKMnTWLGIFYGYKGLLLLLGIFLA 801 fltRklPvdnFNEAKfItFSMYNvltfCiVWvAFiPaYlstpgsaedykv ++t+ +++++ N+++++++++YNv + C++ +++ ++ s+++ pj02206 802 YETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTMILSSQQD------A 845 qvaveifsIlaSStglLgciFaPKcYIILfkPekn<-* ++a+ ++I++SS+++L+++F+PK+ ++++ e++ pj02206 846 AFAFASLAIVFSSYITLVVLFVPKMRRLITRGEWQ 880 //