hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-18083134/chunk_1/iprscan-20090525-18083134.nocrc
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Query sequence: pj02206
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00032                                                  54.6    1.3e-11   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00032    1/2      43   109 ..     1    79 []     4.9       12
SM00032    2/2     113   170 ..     1    79 []    49.6    4e-10

Alignments of top-scoring domains:
SM00032: domain 1 of 2, from 43 to 109: score 4.9, E = 12
                   *->Cp.PppdidienGrvtsssssit.stpkgtysyGstvtysCnpGYtl
                      C       ++  G ++++   +++++  +  ++  +++y C+   + 
     pj02206    43    CQiIH---PPWEGGIRYRGLTRDqVKAINFLPVDYEIEYVCRGEREV 86   

                   vGgsqpekSrestsstitCtsn..WspppsgplPtC<-*
                   vG           +++++C++n++W++       +C   
     pj02206    87 VG-----------PKVRKCLANgsWTDMD--TPSRC    109  

SM00032: domain 2 of 2, from 113 to 170: score 49.6, E = 4e-10
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      C++  +  ++enG+v  +          +   G +v ++C+p ++lv
     pj02206   113    CSkSYL--TLENGKVFLTG------GDLPALDGARVDFRCDPDFHLV 151  

                   GgsqpekSrestsstitCtsn.WspppsgplPtC<-*
                   G           ss++ C  ++Ws p     P C   
     pj02206   152 G-----------SSRSICSQGqWSTPK----PHC    170  

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