hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-15020990/chunk_1/iprscan-20080813-15020990.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj02276 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 438.3 9.7e-129 1 PF07714.7.fs Protein tyrosine kinase 436.4 3.5e-128 1 PF00757.10.fs Furin-like cysteine rich region 352.3 7.3e-103 2 PF00757.10.ls Furin-like cysteine rich region 347.4 2.2e-101 1 PF01030.14.fs Receptor L domain 153.3 2.3e-44 1 PF01030.14.ls Receptor L domain 155.1 1.6e-43 1 PF00069.15.fs Protein kinase domain 126.8 6.8e-36 1 PF00069.15.ls Protein kinase domain 125.7 1.2e-34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00757.10.fs 1/2 55 209 .. 1 179 [] 345.6 7.9e-101 PF00757.10.ls 1/1 55 209 .. 1 179 [] 347.4 2.2e-101 PF01030.14.ls 1/1 232 352 .. 1 145 [] 155.1 1.6e-43 PF01030.14.fs 1/1 232 352 .. 1 145 [] 153.3 2.3e-44 PF07714.7.ls 1/1 583 839 .. 1 272 [] 438.3 9.7e-129 PF07714.7.fs 1/1 583 839 .. 1 272 [] 436.4 3.5e-128 PF00069.15.fs 1/1 583 780 .. 1 208 [. 126.8 6.8e-36 PF00069.15.ls 1/1 583 839 .. 1 287 [] 125.7 1.2e-34 Alignments of top-scoring domains: PF00757.10.fs: domain 1 of 2, from 55 to 209: score 345.6, E = 7.9e-101 *->greCpkvChGTleakGesCkkttiNGefdyRCWGsgpedCQklTKlv + +C+k C+ +sC++++ CWG+g+e+CQklTK++ pj02276 55 LGSCQK-CD-------PSCPNGS--------CWGAGEENCQKLTKII 85 CpsqCsgGrrCtgpnptdCCHeeCaGGCTGHGPkdPtDClACRhFyddGi C++qCsg rC+g+ p+dCCH++Ca+GCT GP++ +DCl+CR+F+d+++ pj02276 86 CAQQCSG--RCRGKSPSDCCHNQCAAGCT--GPRE-SDCLVCRKFRDEAT 130 CketCPpptyynedTrqvdfNPegkYqfGasCVkeCPsnylvthnGsCvr Ck+tCPp+++yn++T+q+d+NPegkY+fGa+CVk+CP+ny+vt++GsCvr pj02276 131 CKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVR 180 sCPsgHktevgAesGvreCekCReGpCPKvCe<-* +C ++ +e++ e+Gvr+C+kC eGpC+KvC+ pj02276 181 ACGAD-SYEME-EDGVRKCKKC-EGPCRKVCN 209 PF00757.10.ls: domain 1 of 1, from 55 to 209: score 347.4, E = 2.2e-101 *->greCpkvChGTleakGesCkkttiNGefdyRCWGsgpedCQklTKlv + +C+k C+ +sC++++ CWG+g+e+CQklTK++ pj02276 55 LGSCQK-CD-------PSCPNGS--------CWGAGEENCQKLTKII 85 CpsqCsgGrrCtgpnptdCCHeeCaGGCTGHGPkdPtDClACRhFyddGi C++qCsg rC+g+ p+dCCH++Ca+GCT GP++ +DCl+CR+F+d+++ pj02276 86 CAQQCSG--RCRGKSPSDCCHNQCAAGCT--GPRE-SDCLVCRKFRDEAT 130 CketCPpptyynedTrqvdfNPegkYqfGasCVkeCPsnylvthnGsCvr Ck+tCPp+++yn++T+q+d+NPegkY+fGa+CVk+CP+ny+vt++GsCvr pj02276 131 CKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVR 180 sCPsgHktevgAesGvreCekCReGpCPKvCe<-* +C ++ +e++ e+Gvr+C+kC eGpC+KvC+ pj02276 181 ACGAD-SYEME-EDGVRKCKKC-EGPCRKVCN 209 PF01030.14.ls: domain 1 of 1, from 232 to 352: score 155.1, E = 1.6e-43 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee nCt I G+L+I+++ + gd+ f++++++++ +l L++++e pj02276 232 NCTSISGDLHILPVAFRGDS--FTHTPPLDPQ-----ELDILKTVKE 271 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl itG+LlI+ +p n ++l+ ++NL++IrGr+++++ +++l++++ pj02276 272 ITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHG----QFSLAVVSLN-- 315 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- +++Lgl+sLkeI++ G+v+i+ N+ +LCy +t i+w++++ pj02276 316 ------ITSLGLRSLKEISD--GDVIISGNK--NLCYANT-INWKKLF 352 * pj02276 - - PF01030.14.fs: domain 1 of 1, from 232 to 352: score 153.3, E = 2.3e-44 *->nCtvIeGnLeItlrsengdkkwfsniedeleldseledlssLsniee nCt I G+L+I+++ + gd+ f++++++++ +l L++++e pj02276 232 NCTSISGDLHILPVAFRGDS--FTHTPPLDPQ-----ELDILKTVKE 271 itGyLlIyrtpgnlvslsFLpNLrvIrGrnlfddsntdnyalvildNpnl itG+LlI+ +p n ++l+ ++NL++IrGr+++++ +++l++++ pj02276 272 ITGFLLIQAWPENRTDLHAFENLEIIRGRTKQHG----QFSLAVVSLN-- 315 nksssGLeeLglpsLkeItskgGgvyihnNpHPkLCyteteidwflit<- +++Lgl+sLkeI++ G+v+i+ N+ +LCy +t i+w++++ pj02276 316 ------ITSLGLRSLKEISD--GDVIISGNK--NLCYANT-INWKKLF 352 * pj02276 - - PF07714.7.ls: domain 1 of 1, from 583 to 839: score 438.3, E = 9.7e-129 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k++k+LG+GaFG+VykG + ++g++ +i+VA+K L+e +s+++ pj02276 583 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELRE-ATSPKA-- 626 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++ l EA +M + d+p++ rLlG+c+ + ++t +m+ G+L pj02276 627 NKEILDEAYVMASV-DNPHVCRLLGICL--TST----VQLITQLMPFGCL 669 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ld+ r+h ++++ + Ll++++QiAkGM+YLe++++vHRDLAARN+LV+ pj02276 670 LDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVK 717 enlvVKIsDFGLaRdi..ynddyYvrkkgggklPvkWmAPEslkygkFts + +VKI+DFGLa++++ ++++y +ggk+P+kWmA+Es+ ++++t+ pj02276 718 TPQHVKITDFGLAKLLgaEEKEYH---AEGGKVPIKWMALESILHRIYTH 764 kSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPd +SDVWS+GV+ WE++t+G +P Y g++ +e+ l e+G+RLp+P+ C+ pj02276 765 QSDVWSYGVTVWELMTFGSKP-YDGIPASEISSIL-EKGERLPQPPICTI 812 elYdlMlqCWaedPedRPtFselveeL<-* ++Y++M +CW+ d++ RP F+el+ e+ pj02276 813 DVYMIMVKCWMIDADSRPKFRELIIEF 839 PF07714.7.fs: domain 1 of 1, from 583 to 839: score 436.4, E = 3.5e-128 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie +k++k+LG+GaFG+VykG + ++g++ +i+VA+K L+e +s+++ pj02276 583 FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELRE-ATSPKA-- 626 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL ++ l EA +M + d+p++ rLlG+c+ + ++t +m+ G+L pj02276 627 NKEILDEAYVMASV-DNPHVCRLLGICL--TST----VQLITQLMPFGCL 669 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs ld+ r+h ++++ + Ll++++QiAkGM+YLe++++vHRDLAARN+LV+ pj02276 670 LDYVREH--KDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVK 717 enlvVKIsDFGLaRdi..ynddyYvrkkgggklPvkWmAPEslkygkFts + +VKI+DFGLa++++ ++++y +ggk+P+kWmA+Es+ ++++t+ pj02276 718 TPQHVKITDFGLAKLLgaEEKEYH---AEGGKVPIKWMALESILHRIYTH 764 kSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPd +SDVWS+GV+ WE++t+G +P Y g++ +e+ l e+G+RLp+P+ C+ pj02276 765 QSDVWSYGVTVWELMTFGSKP-YDGIPASEISSIL-EKGERLPQPPICTI 812 elYdlMlqCWaedPedRPtFselveeL<-* ++Y++M +CW+ d++ RP F+el+ e+ pj02276 813 DVYMIMVKCWMIDADSRPKFRELIIEF 839 PF00069.15.fs: domain 1 of 1, from 583 to 780: score 126.8, E = 6.8e-36 *->yelleklGsGsfGtVykakhkgtgk....iVAvKiikkr.kekskkd ++++++lGsG+fGtVyk+ ++ +g++ + VA+K+++ ++ k +k+ pj02276 583 FKKIKVLGSGAFGTVYKGLWIPEGEkvkiPVAIKELREAtSPKANKE 629 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf + + E++++++++ p+++rl++++ + + l++ +++ G L pj02276 630 ILD----EAYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFG----CLL 670 dylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILl dy++ + k ++ + + +++ Qi++g++YL +++ +HRDL N+L+ pj02276 671 DYVR--EHKDNI--GSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLV 716 dnngvvdaflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggng + +v Ki+DFGlAk+l +++ ++ + + + +mA E +l ++ pj02276 717 KTPQHV----KITDFGLAKLLGaEeKEYhAEGGKVPIKWMALESIL-HRI 761 ygtkvDvWSlGvilyellt<-* y++ +DvWS+Gv+++el+t pj02276 762 YTHQSDVWSYGVTVWELMT 780 PF00069.15.ls: domain 1 of 1, from 583 to 839: score 125.7, E = 1.2e-34 *->yelleklGsGsfGtVykakhkgtgk....iVAvKiikkr.kekskkd ++++++lGsG+fGtVyk+ ++ +g++ + VA+K+++ ++ k +k+ pj02276 583 FKKIKVLGSGAFGTVYKGLWIPEGEkvkiPVAIKELREAtSPKANKE 629 ktarrlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLf + + E++++++++ p+++rl++++ + + l++ +++ G L pj02276 630 ILD----EAYVMASVDNPHVCRLLGICL-TSTVQLITQLMPFG----CLL 670 dylsetrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILl dy++ + k ++ + + +++ Qi++g++YL +++ +HRDL N+L+ pj02276 671 DYVR--EHKDNI--GSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLV 716 dnngvvdaflKiaDFGlAkkls.t.sss.lttfvGTpwYmAPEvllggng + +v Ki+DFGlAk+l +++ ++ + + + +mA E +l ++ pj02276 717 KTPQHV----KITDFGLAKLLGaEeKEYhAEGGKVPIKWMALESIL-HRI 761 ygtkvDvWSlGvilyelltGkpPFsgevqds.ldqlqlirkilgpplefd y++ +DvWS+Gv+++el+t ++ +++++ i ++++ + + pj02276 762 YTHQSDVWSYGVTVWELMTFGSKPYDG---IpASEISSILEKGE---RLP 805 spewdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf< p ++ + ++ kc+ D +R+ ++e+ f pj02276 806 QPPICT-------------IDVYMIMVKCWMIDADSRPKFRELIIE--F 839 -* pj02276 - 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