hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-15081464/chunk_1/iprscan-20080813-15081464.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj02337 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00521.10.ls DNA gyrase/topoisomerase IV, subunit A 464.0 1.7e-136 1 PF00521.10.fs DNA gyrase/topoisomerase IV, subunit A 462.1 6.7e-136 1 PF08070.2.ls DTHCT (NUC029) region 209.0 1e-59 1 PF08070.2.fs DTHCT (NUC029) region 207.0 3.9e-59 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00521.10.fs 1/1 117 584 .. 1 491 [] 462.1 6.7e-136 PF00521.10.ls 1/1 117 584 .. 1 491 [] 464.0 1.7e-136 PF08070.2.fs 1/1 891 994 .. 1 106 [] 207.0 3.9e-59 PF08070.2.ls 1/1 891 994 .. 1 106 [] 209.0 1e-59 Alignments of top-scoring domains: PF00521.10.fs: domain 1 of 1, from 117 to 584: score 462.1, E = 6.7e-136 *->RALPDVRDGLKPVHRRILYAMyelGltpdkpykKSARiVGdVmGkYH R++P+ +DG KP++R++L+++++++ + +++++++A+ V +++ +YH pj02337 117 RSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMS-AYH 162 PHGDsSvYDAlVRMAQdFSGSmRypLvdGqGNFGsRSiDGDpAAAMRYTE + G++++++++V++AQ+F+GS++++L+++ G+FG+R ++G++AA+ RY++ pj02337 163 H-GEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 211 aRLskiAeeLLrDIdKdTVdFvpNYDGsekEPtVLParfPNLLvNGssGI ++Ls +A+ LL++ +d ++ + +D++++EP+++++++P++L+NG++GI pj02337 212 TMLSTLAR-LLFPAVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGI 260 AVGMATNIPPHNLgEvidAllaLIdnPeaspideLmeiikGPDFPTGgei ++G+A+ P++ +E+++++++++d+ + p+ + ++ +kG++ G ++ pj02337 261 GTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKNFKGTIQELGQNQ 310 IvgrggIrkaYeTGRGsievRakteiEelkeerkggnReaIqivitEiPY + +g+I +++++ +++e++ +t+++ +ke+ +++ ++ pj02337 311 YAVSGEIFVVDRNTVEITELPVRTWTQVYKEQ----------VLEPMLNG 350 qVNKakLiekIaelvkdKkvkFiegIsdvRDEsSdreGiRiVIELKrdla ++++ Li +++e+++d +vkF+ ++++ + ++ G+++V++L ++l+ pj02337 351 TDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLT 400 naevVLNnLykqTqLqstFgvNmlalvnlgrPrvlnLkeiLeafLeHRre + +VL++++++ +++ t+ ++++++++l++ ++ +ke+L +L + + pj02337 401 CNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAEST 450 VitRRtrFeLrKaeeRlHILeGLlkALdn.IDEvIelIRsSddkkeeAKa ++ +++rF+L+K+++++ I ++ +k L + + ++ + + +eA++ pj02337 451 KLNNQARFILEKIQGKITIENRSKKDLIQmLVQRGYESDPVKA-WKEAQE 499 kLmerweeeveemleadigldgtfglseiQAq..............eYDA k e+ +e Q q++++++++++++++++++ pj02337 500 KAAEE---------------------DETQNQhddsssdsgtpsgpDFNY 528 ILdMrLrrLTgLErekLeeEykELeeeIaeLekILasEseerllkiireE IL+M L++LT++++e+L+++++ + +e+++L++ ++ ++++++++ + pj02337 529 ILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSP---SDLWKEDLAAF 575 Leeikkkfg<-* ee+ k + pj02337 576 VEELDKVES 584 PF00521.10.ls: domain 1 of 1, from 117 to 584: score 464.0, E = 1.7e-136 *->RALPDVRDGLKPVHRRILYAMyelGltpdkpykKSARiVGdVmGkYH R++P+ +DG KP++R++L+++++++ + +++++++A+ V +++ +YH pj02337 117 RSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMS-AYH 162 PHGDsSvYDAlVRMAQdFSGSmRypLvdGqGNFGsRSiDGDpAAAMRYTE + G++++++++V++AQ+F+GS++++L+++ G+FG+R ++G++AA+ RY++ pj02337 163 H-GEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 211 aRLskiAeeLLrDIdKdTVdFvpNYDGsekEPtVLParfPNLLvNGssGI ++Ls +A+ LL++ +d ++ + +D++++EP+++++++P++L+NG++GI pj02337 212 TMLSTLAR-LLFPAVDDNLLKFLYDDNQRVEPEWYIPIIPMVLINGAEGI 260 AVGMATNIPPHNLgEvidAllaLIdnPeaspideLmeiikGPDFPTGgei ++G+A+ P++ +E+++++++++d+ + p+ + ++ +kG++ G ++ pj02337 261 GTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKNFKGTIQELGQNQ 310 IvgrggIrkaYeTGRGsievRakteiEelkeerkggnReaIqivitEiPY + +g+I +++++ +++e++ +t+++ +ke+ +++ ++ pj02337 311 YAVSGEIFVVDRNTVEITELPVRTWTQVYKEQ----------VLEPMLNG 350 qVNKakLiekIaelvkdKkvkFiegIsdvRDEsSdreGiRiVIELKrdla ++++ Li +++e+++d +vkF+ ++++ + ++ G+++V++L ++l+ pj02337 351 TDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLT 400 naevVLNnLykqTqLqstFgvNmlalvnlgrPrvlnLkeiLeafLeHRre + +VL++++++ +++ t+ ++++++++l++ ++ +ke+L +L + + pj02337 401 CNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAEST 450 VitRRtrFeLrKaeeRlHILeGLlkALdn.IDEvIelIRsSddkkeeAKa ++ +++rF+L+K+++++ I ++ +k L + + ++ + + +eA++ pj02337 451 KLNNQARFILEKIQGKITIENRSKKDLIQmLVQRGYESDPVKA-WKEAQE 499 kLmerweeeveemleadigldgtfglseiQAq..............eYDA k e+ +e Q q++++++++++++++++++ pj02337 500 KAAEE---------------------DETQNQhddsssdsgtpsgpDFNY 528 ILdMrLrrLTgLErekLeeEykELeeeIaeLekILasEseerllkiireE IL+M L++LT++++e+L+++++ + +e+++L++ ++ ++++++++ + pj02337 529 ILNMSLWSLTKEKVEELIKQRDAKGREVNDLKRKSP---SDLWKEDLAAF 575 Leeikkkfg<-* ee+ k + pj02337 576 VEELDKVES 584 PF08070.2.fs: domain 1 of 1, from 891 to 994: score 207.0, E = 3.9e-59 *->kaAPKgkKraervnSpDSdleagvpkKpappKgKGRgarKRKtSsSD k+APK+kK++e+vnS DSd+e+g+pkK+++pKgKGRga+KRK+S+S+ pj02337 891 KRAPKQKKVVEAVNS-DSDSEFGIPKKTTTPKGKGRGAKKRKASGSE 936 deSDsnFekkvSKsvasKKsKgesdDfdvDldiFqsdfpsavaPraksgR +e+D+n+++k+SK++ sKK+K++s+D+d+D+diF+sdfp+++++++++gR pj02337 937 NEGDYNPGRKTSKTT-SKKPKKTSFDQDSDVDIFPSDFPTEPPSLPRTGR 985 akKpvKYLe<-* a+K+vKY++ pj02337 986 ARKEVKYFA 994 PF08070.2.ls: domain 1 of 1, from 891 to 994: score 209.0, E = 1e-59 *->kaAPKgkKraervnSpDSdleagvpkKpappKgKGRgarKRKtSsSD k+APK+kK++e+vnS DSd+e+g+pkK+++pKgKGRga+KRK+S+S+ pj02337 891 KRAPKQKKVVEAVNS-DSDSEFGIPKKTTTPKGKGRGAKKRKASGSE 936 deSDsnFekkvSKsvasKKsKgesdDfdvDldiFqsdfpsavaPraksgR +e+D+n+++k+SK++ sKK+K++s+D+d+D+diF+sdfp+++++++++gR pj02337 937 NEGDYNPGRKTSKTT-SKKPKKTSFDQDSDVDIFPSDFPTEPPSLPRTGR 985 akKpvKYLe<-* a+K+vKY++ pj02337 986 ARKEVKYFA 994 //