hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-15081464/chunk_1/iprscan-20080813-15081464.nocrc
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Query sequence: pj02337
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00434                                                 775.9   9.5e-229   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00434    1/1      97   570 ..     1   516 []   775.9 9.5e-229

Alignments of top-scoring domains:
SM00434: domain 1 of 1, from 97 to 570: score 775.9, E = 9.5e-229
                   *->idieDfikksyldYamSvIvgRALPdvrDGLKPVQRRILYaMfklgl
                      +++ Dfi+k+++++++  +++R++P+++DG+KP+QR++L+++fk+++
     pj02337    97    LTYNDFINKELILFSN-SDNERSIPSLVDGFKPGQRKVLFTCFKRND 142  

                   tpdepkvKsAriVGdvmGkYHPHGDsSiYdaiVRMAQdFsGSnRypLldg
                   ++ e+kv+++++ +++m++YH++ +++++++iV++AQ+F+GSn+++Ll++
     pj02337   143 KR-EVKVAQLAGSVAEMSAYHHG-EQALMMTIVNLAQNFVGSNNINLLQP 190  

                   qGNFGSrlqdGDdAAAmRYTEaRLspiAreLlrdiDkdtvdFvpNYDGse
                   +G+FG+rl++G+dAA++RY++++Ls +Ar+L++  D+++++F+++ D+++
     pj02337   191 IGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQR 239  

                   iEPtvlPpiiPnLLvNGssGIAVGMATnIPPHNlrEvidavralidnpea
                   +EP++++piiP++L+NG++GI++G+A++ P++  rE++++vr+++d+ ++
     pj02337   240 VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDP 289  

                   skideLmeipkgPDFPTggiivgpdgeIreAYeTGRGsivvRGkieiedd
                         ++ p +++F+++++++g ++            + v+G+i ++d+
     pj02337   290 H-----PMLPNYKNFKGTIQELGQNQ------------YAVSGEIFVVDR 322  

                   kkgrertdRntIvITELPyqvnkakliEkIaelvkdkekKiegIsdvrDE
                            nt++ITELP++++++ ++E+++e++ ++++K + ++++++E
     pj02337   323 ---------NTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKE 363  

                   shdrtgiRiVIeLkrgamaevvlngLyklTkLqstfgiNmlalfdpnGrP
                   +h++t++++V+++++++ a+++ +gL+k++kLq+t+++N ++lfd++G++
     pj02337   364 YHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCL 413  

                   kklnlkeeiLeeFldhRlevytRRteyeLrkaeaeeRlhileglfialdn
                   kk+ ++++iL+eF+d+Rl +y+ R+e++++++ ae  ++ ++++fi++++
     pj02337   414 KKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKI 463  

                   iDEvIvlIrkskdla.eakeklmerdpkkgkkekakke.le.adeeeeee
                    +++ +++r++kdl++ + ++++e+dp+k++ke+++k+ +e++ ++++++
     pj02337   464 QGKITIENRSKKDLIqMLVQRGYESDPVKAWKEAQEKAaEEdETQNQHDD 513  

                   eeleeeevgkksqsedekad.fglseiqadaILdmrLrrLTklerekLek
                    +                +d+   s  ++++IL+m L++LTk+++e+L+k
     pj02337   514 SS----------------SDsGTPSGPDFNYILNMSLWSLTKEKVEELIK 547  

                   EykeLekeiedLekilaseewln<-*
                   +++ +  e++dL+++++s++w +   
     pj02337   548 QRDAKGREVNDLKRKSPSDLWKE    570  

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