hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-15142351/chunk_1/iprscan-20080813-15142351.nocrc
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Query sequence: pj02363
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01285.9.fs TEA/ATTS domain family                         586.1   3.2e-173   1
PF01285.9.ls TEA/ATTS domain family                         455.2     8e-134   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01285.9.ls   1/1       1   351 [.     1   513 []   455.2   8e-134
PF01285.9.fs   1/1      34   351 ..   161   513 .]   586.1 3.2e-173

Alignments of top-scoring domains:
PF01285.9.ls: domain 1 of 1, from 1 to 351: score 455.2, E = 8e-134
                   *->vPsfeLvnatlkaewtaskspsakatktDkqrgeestggSeagdkpg
                       P                +++          ++ ++   + a     
     pj02363     1    NPW---------------ALG---------GGRRKDVPQPTALVLHM 23   

                   dsgekSekteslsarPrrDlskDAEgVWSpdiEqaFQEALaiyPPcGRRK
                   +s         ls                     +F              
     pj02363    24 SS--------NLS---------------------SF-------------- 30   

                   IIlSdeGKmYGRNELIArYIKlrTGKtRTRKQVSSHIQVLarrkkGlrdi
                                                            +        
     pj02363    31 -----------------------------------------SPS------ 33   

                   qaKlKeqsdrstaqtqpvdqvskdkafqlmasmsSaqlvSaeslllkLsp
                   qa                dqvskdka+q+masmsSaq+vSa++l++k+sp
     pj02363    34 QAMNL-------------DQVSKDKALQSMASMSSAQIVSASVLQNKFSP 70   

                   pGsldlpsavtfspvslfwdgieeti.qplssqddvkpftqpdyivqats
                   p +l  p+a +fs +s+fw+ +   ++qp++sqd +kpf+qp+y++q+++
     pj02363    71 PSPL--PQA-VFSTSSRFWSSPPLLGqQPGPSQD-IKPFAQPAYPIQPPL 116  

                   salslpgfeptppLPpPapslsnWqksfPhLirnlastndPLnlrllefs
                   ++  l+++ep +pLP +a s++ Wq+      r++as++    lrlle+s
     pj02363   117 PP-TLSSYEPLAPLPSAAASVPVWQD------RTIASSR----LRLLEYS 155  

                   aflelqrdfesydkhLfVhieqdianPseqsdPtlesvdirqiydkFpEK
                   af+e+qrd+++y+khLfVhi+q  +nP + sdP+le+vd+rqiydkFpEK
     pj02363   156 AFMEVQRDPDTYSKHLFVHIGQ--TNPAF-SDPPLEAVDVRQIYDKFPEK 202  

                   kggLkelyekgpkPhttkvnafFlvkfWAdlntkqetqdepeasStGfyg
                   kggLkelyekgp+      nafFlvkfWAdln++  +q+ p+a    fyg
     pj02363   203 KGGLKELYEKGPP------NAFFLVKFWADLNST--IQEGPGA----FYG 240  

                   vsSqYeSrEnvvltcstkvcsfgkqvvekveneyprsengrrkrmaiyvy
                   vsSqY+S+  +++ +stkvcsfgkqvvekve+ey+r+engr      +vy
     pj02363   241 VSSQYSSADSMTISVSTKVCSFGKQVVEKVETEYARLENGR------FVY 284  

                   rinrspmceYminfihkLkqlperymmNSVLENFTILQvvtnrdtqelll
                   ri+rspmceYminfihkLk+lpe+ymmNSVLENFTILQvvt+rd+qe+ll
     pj02363   285 RIHRSPMCEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTSRDSQETLL 334  

                   ciayvFevSnqehgaqh<-*
                   +ia+vFevS++ehgaqh   
     pj02363   335 VIAFVFEVSTSEHGAQH    351  

PF01285.9.fs: domain 1 of 1, from 34 to 351: score 586.1, E = 3.2e-173
                   *->qtqpvdqvskdkafqlmasmsSaqlvSaeslllkLsppGsldlpsav
                      q+ ++dqvskdka+q+masmsSaq+vSa++l++k+spp +l  p+a 
     pj02363    34    QAMNLDQVSKDKALQSMASMSSAQIVSASVLQNKFSPPSPL--PQA- 77   

                   tfspvslfwdgieeti.qplssqddvkpftqpdyivqatssalslpgfep
                   +fs +s+fw+ +   ++qp++sqd +kpf+qp+y++q+++++  l+++ep
     pj02363    78 VFSTSSRFWSSPPLLGqQPGPSQD-IKPFAQPAYPIQPPLPP-TLSSYEP 125  

                   tppLPpPapslsnWqksfPhLirnlastndPLnlrllefsaflelqrdfe
                    +pLP +a s++ Wq+      r++as++    lrlle+saf+e+qrd++
     pj02363   126 LAPLPSAAASVPVWQD------RTIASSR----LRLLEYSAFMEVQRDPD 165  

                   sydkhLfVhieqdianPseqsdPtlesvdirqiydkFpEKkggLkelyek
                   +y+khLfVhi+q  +nP + sdP+le+vd+rqiydkFpEKkggLkelyek
     pj02363   166 TYSKHLFVHIGQ--TNPAF-SDPPLEAVDVRQIYDKFPEKKGGLKELYEK 212  

                   gpkPhttkvnafFlvkfWAdlntkqetqdepeasStGfygvsSqYeSrEn
                   gp+      nafFlvkfWAdln++  +q+ p+a    fygvsSqY+S+  
     pj02363   213 GPP------NAFFLVKFWADLNST--IQEGPGA----FYGVSSQYSSADS 250  

                   vvltcstkvcsfgkqvvekveneyprsengrrkrmaiyvyrinrspmceY
                   +++ +stkvcsfgkqvvekve+ey+r+engr      +vyri+rspmceY
     pj02363   251 MTISVSTKVCSFGKQVVEKVETEYARLENGR------FVYRIHRSPMCEY 294  

                   minfihkLkqlperymmNSVLENFTILQvvtnrdtqelllciayvFevSn
                   minfihkLk+lpe+ymmNSVLENFTILQvvt+rd+qe+ll+ia+vFevS+
     pj02363   295 MINFIHKLKHLPEKYMMNSVLENFTILQVVTSRDSQETLLVIAFVFEVST 344  

                   qehgaqh<-*
                   +ehgaqh   
     pj02363   345 SEHGAQH    351  

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