hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-15195000/chunk_1/iprscan-20080813-15195000.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj02402 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07679.6.fs Immunoglobulin I-set domain 284.8 1.5e-82 5 PF07679.6.ls Immunoglobulin I-set domain 272.8 6.1e-79 5 PF00047.15.ls Immunoglobulin domain 235.6 9.9e-68 5 PF00047.15.fs Immunoglobulin domain 226.0 7.7e-65 5 PF00041.11.ls Fibronectin type III domain 109.1 1.2e-29 2 PF00041.11.fs Fibronectin type III domain 105.1 1.6e-29 2 PF07686.7.fs Immunoglobulin V-set domain 53.2 1.7e-14 4 PF08205.3.fs CD80-like C2-set immunoglobulin domain 38.0 4e-10 3 PF07686.7.ls Immunoglobulin V-set domain 41.9 2e-09 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07686.7.ls 1/3 100 194 .. 1 141 [] 17.3 0.00088 PF07679.6.fs 1/5 101 195 .. 1 96 [] 89.7 1.5e-25 PF07679.6.ls 1/5 101 195 .. 1 96 [] 91.7 2.1e-24 PF00047.15.fs 1/5 115 179 .. 1 65 [] 46.8 4.5e-12 PF00047.15.ls 1/5 115 179 .. 1 65 [] 48.7 1.8e-11 PF07679.6.ls 2/5 199 289 .. 1 96 [] 16.3 4.8e-05 PF07679.6.fs 2/5 199 270 .. 1 79 [. 26.5 3.9e-07 PF00047.15.fs 2/5 213 272 .. 1 65 [] 34.4 1.1e-08 PF00047.15.ls 2/5 213 272 .. 1 65 [] 36.3 1e-07 PF07686.7.fs 3/4 294 386 .. 1 141 [] 19.3 5.4e-05 PF07686.7.ls 2/3 294 386 .. 1 141 [] 21.0 0.00037 PF07679.6.ls 3/5 295 385 .. 1 96 [] 87.8 3.1e-23 PF07679.6.fs 3/5 295 385 .. 1 96 [] 85.8 2e-24 PF00047.15.fs 3/5 309 370 .. 1 65 [] 49.8 6.6e-13 PF00047.15.ls 3/5 309 370 .. 1 65 [] 51.7 2.3e-12 PF08205.3.fs 2/3 385 455 .. 1 73 [. 16.6 0.00042 PF07679.6.fs 4/5 389 483 .. 1 96 [] 51.1 2.6e-14 PF07679.6.ls 4/5 389 483 .. 1 96 [] 53.1 8.6e-13 PF00047.15.fs 4/5 403 468 .. 1 65 [] 45.0 1.4e-11 PF00047.15.ls 4/5 403 468 .. 1 65 [] 46.9 6.1e-11 PF07679.6.ls 5/5 487 577 .. 1 96 [] 24.0 1.1e-05 PF07679.6.fs 5/5 499 570 .. 14 89 .. 31.6 1.3e-08 PF00047.15.ls 5/5 500 562 .. 1 65 [] 52.0 1.9e-12 PF00047.15.fs 5/5 500 562 .. 1 65 [] 50.0 5.7e-13 PF00041.11.fs 1/2 581 669 .. 1 84 [] 52.1 2.6e-14 PF00041.11.ls 1/2 581 669 .. 1 84 [] 54.1 4.3e-13 PF00041.11.ls 2/2 683 767 .. 1 84 [] 55.0 2.3e-13 PF00041.11.fs 2/2 683 767 .. 1 84 [] 53.0 1.4e-14 Alignments of top-scoring domains: PF07686.7.ls: domain 1 of 3, from 100 to 194: score 17.3, E = 0.00088 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++qv p+ ++G+s + C++ +d pj02402 100 SLQVDI-VPS------------QGEISVGESKFFLCQVA---GDA-- 128 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ +i+W+ + + +++++++ v + + t pj02402 129 --KDKDISWFS-PNG------------EKLTPNQQRISVVWNDDSSST-- 161 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* LtI n+ +D G+Y C+v + e+ +++ ++ V+ pj02402 162 ---------LTIYNANIDDAGIYKCVVTG--EDGSESEATVNVK 194 PF07679.6.fs: domain 1 of 5, from 101 to 195: score 89.7, E = 1.5e-25 *->PkFtqkpkdveVqeGesarfeCkVtGt.PePtVsWfKd.Gqplssvl + +++p+ e+++Ges +f C+V G+ + ++sWf +G++l++ pj02402 101 LQVDIVPSQGEISVGESKFFLCQVAGDaKDKDISWFSPnGEKLTP-- 145 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeasaeL + +r++v++++ + +tLtI+n+++dD+G+Y+Cv+t +++ e+ea++++ pj02402 146 -NQQRISVVWND-DSSSTLTIYNANIDDAGIYKCVVTGEdGSESEATVNV 193 tV<-* ++ pj02402 194 KI 195 PF07679.6.ls: domain 1 of 5, from 101 to 195: score 91.7, E = 2.1e-24 *->PkFtqkpkdveVqeGesarfeCkVtGt.PePtVsWfKd.Gqplssvl + +++p+ e+++Ges +f C+V G+ + ++sWf +G++l++ pj02402 101 LQVDIVPSQGEISVGESKFFLCQVAGDaKDKDISWFSPnGEKLTP-- 145 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNs.aGeaeasaeL + +r++v++++ + +tLtI+n+++dD+G+Y+Cv+t +++ e+ea++++ pj02402 146 -NQQRISVVWND-DSSSTLTIYNANIDDAGIYKCVVTGEdGSESEATVNV 193 tV<-* ++ pj02402 194 KI 195 PF00047.15.fs: domain 1 of 5, from 115 to 179: score 46.8, E = 4.5e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ges + C+v + +d +++W++ ++++ +++++++s+ ++d +++ pj02402 115 GESKFFLCQVA-GDAKDKDISWFSPNGeKLtPNQQRISVVWNDDSSS 160 tsLtitnvtpeDggtYtCvv<-* t Lti n+ +D+g+Y+Cvv pj02402 161 T-LTIYNANIDDAGIYKCVV 179 PF00047.15.ls: domain 1 of 5, from 115 to 179: score 48.7, E = 1.8e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq Ges + C+v + +d +++W++ ++++ +++++++s+ ++d +++ pj02402 115 GESKFFLCQVA-GDAKDKDISWFSPNGeKLtPNQQRISVVWNDDSSS 160 tsLtitnvtpeDggtYtCvv<-* t Lti n+ +D+g+Y+Cvv pj02402 161 T-LTIYNANIDDAGIYKCVV 179 PF07679.6.ls: domain 2 of 5, from 199 to 289: score 16.3, E = 4.8e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd..Gqplssvl F p ++e +eGe+a+ C+V + +Pt+ W++++++ l+ pj02402 199 LMFKNAPTPQEFREGEDAVIVCDVVSSLPPTIIWKHKgrDVILKK-- 243 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtC..vAtNsaGeaeasae + rf v ++ L I+++++ D+G+Y+C+++ ++ ++++ pj02402 244 --DVRFIVLSNN-----YLQIRGIKKTDEGTYRCegRILARGEINFKDIQ 286 LtV<-* ++V pj02402 287 VIV 289 PF07679.6.fs: domain 2 of 5, from 199 to 270: score 26.5, E = 3.9e-07 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKd..Gqplssvl F p ++e +eGe+a+ C+V + +Pt+ W++++++ l+ pj02402 199 LMFKNAPTPQEFREGEDAVIVCDVVSSLPPTIIWKHKgrDVILKK-- 243 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtC<-* + rf v ++ L I+++++ D+G+Y+C pj02402 244 --DVRFIVLSNN-----YLQIRGIKKTDEGTYRC 270 PF00047.15.fs: domain 2 of 5, from 213 to 272: score 34.4, E = 1.1e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty Ge++ ++C v ++ ++t+ W++ g +++ +v+ ++ +n+ pj02402 213 GEDAVIVCDV--VSSLPPTIIWKHKGRdVIlKKDVRfIVLSNNY--- 254 qtsLtitnvtpeDggtYtCvv<-* L+i+ +++ D+gtY+C+ pj02402 255 ---LQIRGIKKTDEGTYRCEG 272 PF00047.15.ls: domain 2 of 5, from 213 to 272: score 36.3, E = 1e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty Ge++ ++C v ++ ++t+ W++ g +++ +v+ ++ +n+ pj02402 213 GEDAVIVCDV--VSSLPPTIIWKHKGRdVIlKKDVRfIVLSNNY--- 254 qtsLtitnvtpeDggtYtCvv<-* L+i+ +++ D+gtY+C+ pj02402 255 ---LQIRGIKKTDEGTYRCEG 272 PF07686.7.fs: domain 3 of 4, from 294 to 386: score 19.3, E = 5.4e-05 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +q q t+++G+svtL C + pj02402 294 TIQARQ-NIV------------NATANLGQSVTLVCDAE----GF-- 321 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ +++W + +g + +e+ +++ +s pj02402 322 --PEPTMSWTK----------------------DGEQIEQEEDDEKYIFS 347 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* + s LtI+++ D++ Y C n ++ + ++L V pj02402 348 DDSS----QLTIKKVDKNDEAEYICIAENK-AGEQDATIHLKVF 386 PF07686.7.ls: domain 2 of 3, from 294 to 386: score 21.0, E = 0.00037 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +q q t+++G+svtL C + pj02402 294 TIQARQ-NIV------------NATANLGQSVTLVCDAE----GF-- 321 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ +++W + +g + +e+ +++ +s pj02402 322 --PEPTMSWTK----------------------DGEQIEQEEDDEKYIFS 347 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* + s LtI+++ D++ Y C n ++ + ++L V pj02402 348 DDSS----QLTIKKVDKNDEAEYICIAENK-AGEQDATIHLKVF 386 PF07679.6.ls: domain 3 of 5, from 295 to 385: score 87.8, E = 3.1e-23 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp + q + +++++ G+s+++ C+++G+PePt sW+KdG+++ + pj02402 295 IQARQNIVNATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIEQ---E 338 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +d k+ +++ + + LtI++v++ D+ +Y C+A+N+aGe+ a+++L+V pj02402 339 EDDEKYIFSD--DSSQLTIKKVDKNDEAEYICIAENKAGEQDATIHLKV 385 -* pj02402 - - PF07679.6.fs: domain 3 of 5, from 295 to 385: score 85.8, E = 2e-24 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp + q + +++++ G+s+++ C+++G+PePt sW+KdG+++ + pj02402 295 IQARQNIVNATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIEQ---E 338 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +d k+ +++ + + LtI++v++ D+ +Y C+A+N+aGe+ a+++L+V pj02402 339 EDDEKYIFSD--DSSQLTIKKVDKNDEAEYICIAENKAGEQDATIHLKV 385 -* pj02402 - - PF00047.15.fs: domain 3 of 5, from 309 to 370: score 49.8, E = 6.6e-13 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+svtL+C + +g p++t++W+++g +++++++ + ++ds++ pj02402 309 GQSVTLVCDA--EGFPEPTMSWTKDGEqIEqEEDDEKYIFSDDSSQ- 352 tsLtitnvtpeDggtYtCvv<-* Lti++v+++D+++Y C + pj02402 353 --LTIKKVDKNDEAEYICIA 370 PF00047.15.ls: domain 3 of 5, from 309 to 370: score 51.7, E = 2.3e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+svtL+C + +g p++t++W+++g +++++++ + ++ds++ pj02402 309 GQSVTLVCDA--EGFPEPTMSWTKDGEqIEqEEDDEKYIFSDDSSQ- 352 tsLtitnvtpeDggtYtCvv<-* Lti++v+++D+++Y C + pj02402 353 --LTIKKVDKNDEAEYICIA 370 PF08205.3.fs: domain 2 of 3, from 385 to 455: score 16.6, E = 0.00042 *->peIeppasllege.k.senlevvatCvlpysagGkPapritWyldgk + +p+++ +e++++ + +++v++tC a+G P p+itW+++ + pj02402 385 VFAKPKITYVENQtAmELEEQVTLTCE----ASGDPIPSITWRTSTR 427 elvpeekteaittsseqdpesglytvtS<-* eekt++ + +++++ t+ S pj02402 428 NISSEEKTLDGHMVVRSHARVSSLTLKS 455 PF07679.6.fs: domain 4 of 5, from 389 to 483: score 51.1, E = 2.6e-14 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvl.l Pk+t + e ++++C+++G+P P+++W + +ss ++ pj02402 389 PKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTRNISSEEkT 435 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV ++++ v+ ++Lt + +q D+G+Y C+A+N G+++ s L V pj02402 436 LDGHMVVRSHA--RVSSLTLKSIQYTDAGEYICTASNTIGQDSQSMYLEV 483 <-* pj02402 - - PF07679.6.ls: domain 4 of 5, from 389 to 483: score 53.1, E = 8.6e-13 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvl.l Pk+t + e ++++C+++G+P P+++W + +ss ++ pj02402 389 PKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTRNISSEEkT 435 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV ++++ v+ ++Lt + +q D+G+Y C+A+N G+++ s L V pj02402 436 LDGHMVVRSHA--RVSSLTLKSIQYTDAGEYICTASNTIGQDSQSMYLEV 483 <-* pj02402 - - PF00047.15.fs: domain 4 of 5, from 403 to 468: score 45.0, E = 1.4e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq +e vtLtC++ +g+p +++tW+ ++ +++++ ++ ++s + pj02402 403 EEQVTLTCEA--SGDPIPSITWRTSTRnISsEEKTLDGHMVVRSHAR 447 t.sLtitnvtpeDggtYtCvv<-* +sLt++++++ D+g+Y C++ pj02402 448 VsSLTLKSIQYTDAGEYICTA 468 PF00047.15.ls: domain 4 of 5, from 403 to 468: score 46.9, E = 6.1e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq +e vtLtC++ +g+p +++tW+ ++ +++++ ++ ++s + pj02402 403 EEQVTLTCEA--SGDPIPSITWRTSTRnISsEEKTLDGHMVVRSHAR 447 t.sLtitnvtpeDggtYtCvv<-* +sLt++++++ D+g+Y C++ pj02402 448 VsSLTLKSIQYTDAGEYICTA 468 PF07679.6.ls: domain 5 of 5, from 487 to 577: score 24.0, E = 1.1e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvl.l Pk +q p v eG ++ +C+V +P t+sWf+dGq l+s ++ pj02402 487 PK-LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPS-SnY 531 psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV + +k+ ++ + L++ D G Y C+A N+ G+ + ++ L pj02402 532 S--NIKIYNTP--SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 577 <-* pj02402 - - PF07679.6.fs: domain 5 of 5, from 499 to 570: score 31.6, E = 1.3e-08 *->eGesarfeCkVtGtPePtVsWfKdGqplssvl.lpsdrfkvtydgGs eG ++ +C+V +P t+sWf+dGq l+s ++ + +k+ ++ pj02402 499 EGNQVNITCEVFAYPSATISWFRDGQLLPS-SnYS--NIKIYNTP-- 540 gtytLtIsnvqpdDsGkYtCvAtNsaGeae<-* + L++ D G Y C+A N+ G+ + pj02402 541 SASYLEVTPDSENDFGNYNCTAVNRIGQES 570 PF00047.15.ls: domain 5 of 5, from 500 to 562: score 52.0, E = 1.9e-12 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v++tC+v f+ p++t++W+r+g+ l++++++ + +n+ s ++ pj02402 500 GNQVNITCEV--FAYPSATISWFRDGQlLPsSNYSNIKIYNTPSASY 544 tsLtitnvtpeDggtYtCvv<-* L +t+ +++D g+Y C++ pj02402 545 --LEVTPDSENDFGNYNCTA 562 PF00047.15.fs: domain 5 of 5, from 500 to 562: score 50.0, E = 5.7e-13 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ v++tC+v f+ p++t++W+r+g+ l++++++ + +n+ s ++ pj02402 500 GNQVNITCEV--FAYPSATISWFRDGQlLPsSNYSNIKIYNTPSASY 544 tsLtitnvtpeDggtYtCvv<-* L +t+ +++D g+Y C++ pj02402 545 --LEVTPDSENDFGNYNCTA 562 PF00041.11.fs: domain 1 of 2, from 581 to 669: score 52.1, E = 2.6e-14 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps+P+ +v++ s++++++ + P+ +g+ pi +Y+ ++R ++++ pj02402 581 PSSPSIDQVEP-YSSTAQVQFDEPEatGGVPILKYKAEWR-AVGEEV 625 ..wkeltvpgttt..sytltgLkPgteYtvrVqAvnggG.GpeS<-* + k+++ + ++++ +t+ gLkP t+Y vr++A+ng+G G+ S pj02402 626 whSKWYDAKEASMegIVTIVGLKPETTYAVRLAALNGKGlGEIS 669 PF00041.11.ls: domain 1 of 2, from 581 to 669: score 54.1, E = 4.3e-13 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps+P+ +v++ s++++++ + P+ +g+ pi +Y+ ++R ++++ pj02402 581 PSSPSIDQVEP-YSSTAQVQFDEPEatGGVPILKYKAEWR-AVGEEV 625 ..wkeltvpgttt..sytltgLkPgteYtvrVqAvnggG.GpeS<-* + k+++ + ++++ +t+ gLkP t+Y vr++A+ng+G G+ S pj02402 626 whSKWYDAKEASMegIVTIVGLKPETTYAVRLAALNGKGlGEIS 669 PF00041.11.ls: domain 2 of 2, from 683 to 767: score 55.0, E = 2.3e-13 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew PsaP+ ++ +s+ ++ + ++g++pi +Y v+yR +++++ pj02402 683 PSAPKLEGQMGEDGNSIKVNLIKQDdGGSPIRHYLVRYR-ALSSEWK 728 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e+++p+ +++++l+ L + eY+v+V+A n++G+++ pj02402 729 PEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGkSKAA 767 PF00041.11.fs: domain 2 of 2, from 683 to 767: score 53.0, E = 1.4e-14 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew PsaP+ ++ +s+ ++ + ++g++pi +Y v+yR +++++ pj02402 683 PSAPKLEGQMGEDGNSIKVNLIKQDdGGSPIRHYLVRYR-ALSSEWK 728 keltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* e+++p+ +++++l+ L + eY+v+V+A n++G+++ pj02402 729 PEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGkSKAA 767 //