hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-15195000/chunk_1/iprscan-20080813-15195000.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pj02402 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00408 258.2 6.7e-73 5 SM00409 245.4 4.6e-69 5 SM00060 61.8 8.8e-14 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/5 107 196 .. 1 58 [] 53.9 2.1e-11 SM00408 1/5 113 184 .. 1 56 [] 32.3 6.5e-05 SM00409 2/5 205 290 .. 1 58 [] 48.2 1.1e-09 SM00408 2/5 211 277 .. 1 56 [] 35.6 6.5e-06 SM00409 3/5 301 386 .. 1 58 [] 58.4 9e-13 SM00408 3/5 307 375 .. 1 56 [] 76.0 4.7e-18 SM00409 4/5 395 484 .. 1 58 [] 51.5 1.1e-10 SM00408 4/5 401 473 .. 1 56 [] 62.7 4.6e-14 SM00409 5/5 492 579 .. 1 58 [] 33.4 3.1e-05 SM00408 5/5 498 567 .. 1 56 [] 51.5 1.1e-10 SM00060 1/2 581 666 .. 1 69 [] 42.0 8.2e-08 SM00060 2/2 683 764 .. 1 69 [] 19.8 0.38 Alignments of top-scoring domains: SM00409: domain 1 of 5, from 107 to 196: score 53.9, E = 2.1e-11 *->pp.vtvkeGesvtLtC.as......titWy................. p++ + ++Ges + C+++++ +++ i+W+++++ + ++++++ + pj02402 107 PSqGEISVGESKFFLCqVAgdakdkDISWFspngekltpnqqrisvv 153 ........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++++++LtI n+ +D+ G+Y C++t+ gs s +++++++ pj02402 154 wnddssstLTIyNANIDDA---GIYKCVVTgeDGSESE-ATVNVKIF 196 SM00408: domain 1 of 5, from 113 to 184: score 32.3, E = 6.5e-05 *->leGqsVtLtCpasgdp.vpnItWlk..gkplp.............sg G+s + C ++gd ++ +I+W+ ++g++l +++++ + +++s+ pj02402 113 SVGESKFFLCQVAGDAkDKDISWFSpnGEKLTpnqqrisvvwnddSS 159 stLtiknvsleDsGlYtCvArNsvg<-* stLti n+ +D+G+Y Cv++++ g pj02402 160 STLTIYNANIDDAGIYKCVVTGEDG 184 SM00409: domain 2 of 5, from 205 to 290: score 48.2, E = 1.1e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p +++ +eGe++++ C++ ++ ++ti W++++++ +++ + + pj02402 205 PTpQEFREGEDAVIVCdVVsslppTIIWKhkgrdvilkkdvrfivls 251 ...LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-* ++ L+I+++++ D+ GtY+C+ + g++ + ++++V pj02402 252 nnyLQIrGIKKTDE---GTYRCEGRilaRGEINF-KDIQVIVN 290 SM00408: domain 2 of 5, from 211 to 277: score 35.6, E = 6.5e-06 *->leGqsVtLtCpasgdpvpnItWlk...gkplp........sgstLti +eG+++++ C++ + p+I W++++++ l ++ + s+++L+i pj02402 211 REGEDAVIVCDVVSSLPPTIIWKHkgrDVILKkdvrfivlSNNYLQI 257 knvsleDsGlYtCvArNsvg<-* + +++ D+G+Y+C++r + pj02402 258 RGIKKTDEGTYRCEGRILAR 277 SM00409: domain 3 of 5, from 301 to 386: score 58.4, E = 9e-13 *->pp.vtvkeGesvtLtC.as.....titWy.................. + t+++G+svtL C+a++ + +t++W++++ + + ++ + + pj02402 301 IVnATANLGQSVTLVCdAEgfpepTMSWTkdgeqieqeeddekyifs 347 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++++LtI++v ++D+ ++Y C a++++g++ + +++L+V+ pj02402 348 ddssqLTIkKVDKNDE---AEYICIAEnkAGEQDA--TIHLKVF 386 SM00408: domain 3 of 5, from 307 to 375: score 76.0, E = 4.7e-18 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL + GqsVtL C+a+g+p+p+ +W+k+g+++++++++++ ++++s L pj02402 307 NLGQSVTLVCDAEGFPEPTMSWTKdGEQIEqeeddekyifsdDSSQL 353 tiknvsleDsGlYtCvArNsvg<-* tik v ++D+ +Y C+A+N++g pj02402 354 TIKKVDKNDEAEYICIAENKAG 375 SM00409: domain 4 of 5, from 395 to 484: score 51.5, E = 1.1e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ + e vtLtC+as+++ ++itW++++++ ++ ++ +++ pj02402 395 ENqTAMELEEQVTLTCeASgdpipSITWRtstrnisseektldghmv 441 .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<- +++ + ++Lt++++++ D+ G+Y C+a+++ g++s+ + +L+V+ pj02402 442 vrsharvssLTLkSIQYTDA---GEYICTASntIGQDSQ--SMYLEVQ 484 * pj02402 - - SM00408: domain 4 of 5, from 401 to 473: score 62.7, E = 4.6e-14 *->leGqsVtLtCpasgdpvpnItWlk...gkplp..............s + ++VtLtC+asgdp p+ItW+ ++++ + ++++ +++ +++ pj02402 401 ELEEQVTLTCEASGDPIPSITWRTstrNISSEektldghmvvrshaR 447 gstLtiknvsleDsGlYtCvArNsvg<-* s+Lt+k++++ D+G+Y C+A+N +g pj02402 448 VSSLTLKSIQYTDAGEYICTASNTIG 473 SM00409: domain 5 of 5, from 492 to 579: score 33.4, E = 3.1e-05 *->pp.vtvkeGesvtLtC.as.....titWy.................. p v+ eG v++tC++ ++ ti+W+++++ ++++ ++ + + pj02402 492 PVaVYTWEGNQVNITCeVFaypsaTISWFrdgqllpssnysnikiyn 538 ......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ + L++++ +++D G+Y C+a ++ g+ s +++ ++ pj02402 539 tpsasyLEVtPDSENDF---GNYNCTAVnrIGQESL-EFILVQAD 579 SM00408: domain 5 of 5, from 498 to 567: score 51.5, E = 1.1e-10 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.............sgst eG++V +tC++ ++p ++I+W+++g+ lp+++ ++ + +++s s+ pj02402 498 WEGNQVNITCEVFAYPSATISWFRdGQLLPssnysnikiyntpSASY 544 LtiknvsleDsGlYtCvArNsvg<-* L++++ s++D G+Y C+A N++g pj02402 545 LEVTPDSENDFGNYNCTAVNRIG 567 SM00060: domain 1 of 2, from 581 to 666: score 42.0, E = 8.2e-08 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. P++Ps +v++ +st ++++ ++P+ ++ +i+ Y+ + pj02402 581 PSSPSI---DQVEPYSST-------AQVQFDEPeatggvpILKYKae 617 ........................ytltgLkPgaepwteYefrVrAvngn ++ ++++++ +++ + ++ + ++ +t+ gLkP t+Y +r++A ng pj02402 618 wravgeevwhskwydakeasmegiVTIVGLKPE----TTYAVRLAALNG- 662 daGeg<-* +G g pj02402 663 -KGLG 666 SM00060: domain 2 of 2, from 683 to 764: score 19.8, E = 0.38 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY P++P+ + + s+ + + ++++++ ++ v+Y pj02402 683 PSAPKL---EGQMGEDGN------SIKVNLIKQddggspirhyLVRY 720 r..................ytltgLkPgaepwteYefrVrAvngndaGeg r +++++++ + +++++ + l+ L + eYe+ V+A+n +G + pj02402 721 RalssewkpeirlpsgsdhVMLKSLDWN----AEYEVYVVAENQ--QGKS 764 <-* pj02402 - - //