hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-15253139/chunk_1/iprscan-20080813-15253139.nocrc
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Query sequence: pj02565
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02204.8.fs Vacuolar sorting protein 9 (VPS9) domain       162.8    8.2e-50   1
PF02204.8.ls Vacuolar sorting protein 9 (VPS9) domain       164.7    2.3e-46   1
PF00788.13.fs Ras association (RalGDS/AF-6) domain            44.3    4.6e-11   1
PF00788.13.ls Ras association (RalGDS/AF-6) domain            46.1    1.1e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02204.8.fs   1/1     360   462 ..     1   120 []   162.8  8.2e-50
PF02204.8.ls   1/1     360   462 ..     1   120 []   164.7  2.3e-46
PF00788.13.fs   1/1     492   573 ..     1    97 []    44.3  4.6e-11
PF00788.13.ls   1/1     492   573 ..     1    97 []    46.1  1.1e-10

Alignments of top-scoring domains:
PF02204.8.fs: domain 1 of 1, from 360 to 462: score 162.8, E = 8.2e-50
                   *->veeakqeLrelqYeyySPrdKlqcllrccklIfnalknakgeneaPT
                      +e+++q+L++l  ++ySP++++++ll++ckl+++al++++ge     
     pj02565   360    LEQVRQKLLQLL-RTYSPSAQVKRLLQACKLLYMALRTQEGE----- 400  

                   DPmCGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrlL
                           +++AD fLPlL++v++++++p+Ll+++eY+s++l+p  s lL
     pj02565   401 --------GAGADEFLPLLSLVLAHCDLPELLLEAEYMSELLEP--S-LL 439  

                   sGEegYYLTsLeaAlaFIkslde<-*
                   +GE+gYYLTsL+a+la++++l +   
     pj02565   440 TGEGGYYLTSLSASLALLSGLGQ    462  

PF02204.8.ls: domain 1 of 1, from 360 to 462: score 164.7, E = 2.3e-46
                   *->veeakqeLrelqYeyySPrdKlqcllrccklIfnalknakgeneaPT
                      +e+++q+L++l  ++ySP++++++ll++ckl+++al++++ge     
     pj02565   360    LEQVRQKLLQLL-RTYSPSAQVKRLLQACKLLYMALRTQEGE----- 400  

                   DPmCGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrlL
                           +++AD fLPlL++v++++++p+Ll+++eY+s++l+p  s lL
     pj02565   401 --------GAGADEFLPLLSLVLAHCDLPELLLEAEYMSELLEP--S-LL 439  

                   sGEegYYLTsLeaAlaFIkslde<-*
                   +GE+gYYLTsL+a+la++++l +   
     pj02565   440 TGEGGYYLTSLSASLALLSGLGQ    462  

PF00788.13.fs: domain 1 of 1, from 492 to 573: score 44.3, E = 4.6e-11
                   *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp
                      +++ lrV+++d ++g+++kt+ v++  +   + ++++ Kf++  ++p
     pj02565   492    FQHLLRVAYQDPSSGCtSKTLAVPPEASIATLNQLCATKFRV--TQP 536  

                   edyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrre
                   + + L     +l ++++ + +Lp+ +  +++          + +l+ rr 
     pj02565   537 NTFGL-----FLYKEQGYH-RLPPGALAHRLP--------TTGYLVYRRA 572  

                   d<-*
                   +   
     pj02565   573 E    573  

PF00788.13.ls: domain 1 of 1, from 492 to 573: score 46.1, E = 1.1e-10
                   *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp
                      +++ lrV+++d ++g+++kt+ v++  +   + ++++ Kf++  ++p
     pj02565   492    FQHLLRVAYQDPSSGCtSKTLAVPPEASIATLNQLCATKFRV--TQP 536  

                   edyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrre
                   + + L     +l ++++ + +Lp+ +  +++          + +l+ rr 
     pj02565   537 NTFGL-----FLYKEQGYH-RLPPGALAHRLP--------TTGYLVYRRA 572  

                   d<-*
                   +   
     pj02565   573 E    573  

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