hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-15253139/chunk_1/iprscan-20080813-15253139.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: pj02565
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00167                                                 233.6    1.7e-65   1
SM00314                                                  66.2      4e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00167    1/1     357   475 ..     1   120 []   233.6  1.7e-65
SM00314    1/1     492   573 ..     1   102 []    66.2    4e-15

Alignments of top-scoring domains:
SM00167: domain 1 of 1, from 357 to 475: score 233.6, E = 1.7e-65
                   *->FveieqielkflqlskmYSPsdKikcLLrackviytlletqsKgeva
                      +ve+eq+++k+lql+++YSPs+++k+LL+ack++y++l+tq+ ge+a
     pj02565   357    PVELEQVRQKLLQLLRTYSPSAQVKRLLQACKLLYMALRTQE-GEGA 402  

                   GADdFlPvLiYvIikcdprdLllnveYieeflepslltGeegYYLtsLeA
                   GAD+FlP+L++v+++cd+++Lll++eY++e+lepslltGe+gYYLtsL+A
     pj02565   403 GADEFLPLLSLVLAHCDLPELLLEAEYMSELLEPSLLTGEGGYYLTSLSA 452  

                   ALafikgLteadalilspedeee<-*
                   +La+++gL++a++l+lsp++e++   
     pj02565   453 SLALLSGLGQAHTLPLSPVQELR    475  

SM00314: domain 1 of 1, from 492 to 573: score 66.2, E = 4e-15
                   *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd
                      +++ lrV+ +d+s   +g+t+ktl v+++++ +++ q++++kf++t 
     pj02565   492    FQHLLRVAYQDPS---SGCTSKTLAVPPEASIATLNQLCATKFRVTQ 535  

                   edpeeYvLvevlpsggkErvLlddenPlqlqklwprdaksprqsslrFvL
                     p+++ L++ +  ++++++L+++++ ++l  +              +++
     pj02565   536 --PNTFGLFLYK--EQGYHRLPPGALAHRLPTT-------------GYLV 568  

                   rkrdd<-*
                   ++r     
     pj02565   569 YRRAE    573  

//