hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-15312345/chunk_1/iprscan-20080813-15312345.nocrc
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Query sequence: pj02638
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00788.13.ls Ras association (RalGDS/AF-6) domain            57.6    3.7e-14   1
PF00788.13.fs Ras association (RalGDS/AF-6) domain            55.7    4.2e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00788.13.fs   1/1     265   353 ..     1    97 []    55.7  4.2e-14
PF00788.13.ls   1/1     265   353 ..     1    97 []    57.6  3.7e-14

Alignments of top-scoring domains:
PF00788.13.fs: domain 1 of 1, from 265 to 353: score 55.7, E = 4.2e-14
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      +++ + V+++   +   ++++v++++T+ +V+ +lL Kf++ +d p 
     pj02638   265    YNHKTSVFTPAYGS--VTNVRVNSTMTTLQVLTLLLNKFRV-EDGPS 308  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred
                   +++L     +++++ +er++L d E+Pl+ +  ++++++  r++L + + 
     pj02638   309 EFAL-----YIVHESGERTKLKDCEYPLISRILHGPCEKIARIFLMEADL 353  

                   <-*
                      
     pj02638     -     -    

PF00788.13.ls: domain 1 of 1, from 265 to 353: score 57.6, E = 3.7e-14
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      +++ + V+++   +   ++++v++++T+ +V+ +lL Kf++ +d p 
     pj02638   265    YNHKTSVFTPAYGS--VTNVRVNSTMTTLQVLTLLLNKFRV-EDGPS 308  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred
                   +++L     +++++ +er++L d E+Pl+ +  ++++++  r++L + + 
     pj02638   309 EFAL-----YIVHESGERTKLKDCEYPLISRILHGPCEKIARIFLMEADL 353  

                   <-*
                      
     pj02638     -     -    

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