# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osh00386.fasta.nr -Q sh00386.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sh00386, 132 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6841330 sequences Expectation_n fit: rho(ln(x))= 4.6376+/-0.000179; mu= 8.8531+/- 0.010 mean_var=58.3306+/-11.377, 0's: 42 Z-trim: 56 B-trim: 0 in 0/69 Lambda= 0.167929 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088814|dbj|BAD92854.1| cytochrome b-5 isoform ( 132) 893 223.6 5.7e-57 gi|158428699|pdb|2I96|A Chain A, Solution Structur ( 108) 656 166.2 9.4e-40 gi|117809|sp|P00167|CYB5_HUMAN Cytochrome b5 g ( 134) 656 166.2 1.1e-39 gi|114673564|ref|XP_001135461.1| PREDICTED: simila ( 159) 655 166.0 1.5e-39 gi|181392|gb|AAA52165.1| cytochrome b-5 gi|119 ( 98) 650 164.7 2.4e-39 gi|703083|gb|AAA63169.1| cytochrome b5 ( 142) 650 164.8 3.2e-39 gi|114673566|ref|XP_001135885.1| PREDICTED: simila ( 134) 647 164.0 5e-39 gi|109122478|ref|XP_001083378.1| PREDICTED: simila ( 134) 645 163.6 7e-39 gi|226449|prf||1513199A cytochrome b5 ( 133) 644 163.3 8.3e-39 gi|353818|prf||1106188B cytochrome b5 ( 97) 636 161.3 2.5e-38 gi|57031552|ref|XP_533373.1| PREDICTED: similar to ( 134) 616 156.5 9.2e-37 gi|73621241|sp|P00170|CYB5_HORSE Cytochrome b5 ( 134) 606 154.1 4.9e-36 gi|149721191|ref|XP_001493485.1| PREDICTED: simila ( 134) 606 154.1 4.9e-36 gi|6166051|sp|P00172|CYB5_PIG Cytochrome b5 gi ( 134) 602 153.1 9.6e-36 gi|117811|sp|P00169|CYB5_RABIT Cytochrome b5 g ( 134) 598 152.2 1.9e-35 gi|471150|dbj|BAA01712.1| soluble cytochrome b5 [O ( 98) 595 151.3 2.4e-35 gi|353819|prf||1106188C cytochrome b5 ( 97) 594 151.1 2.9e-35 gi|126322077|ref|XP_001373630.1| PREDICTED: simila ( 134) 595 151.4 3.1e-35 gi|146230092|gb|ABQ12619.1| cytochrome b5 [Capra h ( 134) 593 151.0 4.4e-35 gi|149015875|gb|EDL75182.1| cytochrome b-5, isofor ( 139) 588 149.8 1e-34 gi|117806|sp|P00171|CYB5_BOVIN Cytochrome b5 g ( 134) 587 149.5 1.2e-34 gi|1372997|gb|AAC14455.1| cytochrome b-5 [Bos taur ( 98) 581 148.0 2.6e-34 gi|148677406|gb|EDL09353.1| cytochrome b-5, isofor ( 117) 579 147.5 4.1e-34 gi|149015872|gb|EDL75179.1| cytochrome b-5, isofor ( 98) 577 147.0 5e-34 gi|231928|sp|P00173|CYB5_RAT Cytochrome b5 gi| ( 134) 578 147.3 5.4e-34 gi|209245|gb|AAA72557.1| cytochrome b(5) gi|15 ( 99) 576 146.7 6e-34 gi|2257955|gb|AAB67609.1| cytochrome b5 [Rattus no ( 100) 576 146.7 6e-34 gi|29726279|pdb|1HKO|A Chain A, Nmr Structure Of B ( 104) 575 146.5 7.3e-34 gi|117805|sp|P00168|CYB5_ALOSE Cytochrome b5 ( 87) 574 146.2 7.6e-34 gi|229383|prf||711683C cytochrome b5 fragment ( 87) 573 146.0 8.9e-34 gi|353817|prf||1106188A cytochrome b5 ( 97) 573 146.0 9.7e-34 gi|159162212|pdb|1DO9|A Chain A, Solution Structur ( 94) 572 145.8 1.1e-33 gi|1613840|gb|AAB16807.1| cytochrome b5 [Mesocrice ( 171) 572 146.0 1.8e-33 gi|14277784|pdb|1I87|A Chain A, Solution Structure ( 98) 569 145.0 1.9e-33 gi|148677405|gb|EDL09352.1| cytochrome b-5, isofor ( 98) 568 144.8 2.3e-33 gi|3023608|sp|P56395|CYB5_MOUSE Cytochrome b5 ( 134) 568 144.9 2.9e-33 gi|229382|prf||711683B cytochrome b5 fragment ( 87) 565 144.0 3.4e-33 gi|114673568|ref|XP_001135717.1| PREDICTED: simila ( 124) 566 144.4 3.8e-33 gi|554539|gb|AAA72420.1| cytochrome b5 ( 92) 561 143.1 7e-33 gi|157830773|pdb|1CYO|A Chain A, Bovine Cytochrome ( 93) 556 141.9 1.6e-32 gi|1314248|gb|AAA99718.1| NADH:cytochrome c reduct ( 360) 562 143.8 1.7e-32 gi|488428|gb|AAA67175.1| flavocytochrome b5 chimer ( 356) 561 143.5 2e-32 gi|251978|gb|AAB22636.1| cytochrome b5 [mice, D2, ( 97) 550 140.4 4.6e-32 gi|837345|gb|AAB32285.1| peditoxin, pedin=cytochro ( 82) 548 139.9 5.7e-32 gi|224985|prf||1205244A cytochrome b5 ( 90) 548 139.9 6.1e-32 gi|157830018|pdb|1AQA|A Chain A, Solution Structur ( 94) 546 139.5 8.8e-32 gi|13786770|pdb|1IB7|A Chain A, Solution Structure ( 94) 542 138.5 1.7e-31 gi|208781|gb|AAA72186.1| microsomal cytochrome b-5 ( 94) 541 138.3 2e-31 gi|15826396|pdb|1JEX|A Chain A, Solution Structure ( 94) 541 138.3 2e-31 gi|6980893|pdb|1BLV|A Chain A, Solution Structure ( 94) 539 137.8 2.9e-31 >>gi|62088814|dbj|BAD92854.1| cytochrome b-5 isoform 1 v (132 aa) initn: 893 init1: 893 opt: 893 Z-score: 1178.0 bits: 223.6 E(): 5.7e-57 Smith-Waterman score: 893; 100.000% identity (100.000% similar) in 132 aa overlap (1-132:1-132) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK 10 20 30 40 50 60 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV 70 80 90 100 110 120 130 sh0038 TISSISGCSRCI :::::::::::: gi|620 TISSISGCSRCI 130 >>gi|158428699|pdb|2I96|A Chain A, Solution Structure Of (108 aa) initn: 650 init1: 650 opt: 656 Z-score: 868.9 bits: 166.2 E(): 9.4e-40 Smith-Waterman score: 656; 91.667% identity (97.222% similar) in 108 aa overlap (22-129:1-107) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK ::::::::::::::::::::::::::::::::::::::: gi|158 MAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK 10 20 30 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|158 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPETL 40 50 60 70 80 90 130 sh0038 TISSISGCSRCI :..:.. : gi|158 -ITTIDSSSS 100 >>gi|117809|sp|P00167|CYB5_HUMAN Cytochrome b5 gi|18 (134 aa) initn: 650 init1: 650 opt: 656 Z-score: 867.6 bits: 166.2 E(): 1.1e-39 Smith-Waterman score: 656; 91.667% identity (97.222% similar) in 108 aa overlap (22-129:1-107) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK ::::::::::::::::::::::::::::::::::::::: gi|117 MAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK 10 20 30 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|117 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPETL 40 50 60 70 80 90 130 sh0038 TISSISGCSRCI :..:.. : gi|117 -ITTIDSSSSWWTNWVIPAISAVAVALMYRLYMAED 100 110 120 130 >>gi|114673564|ref|XP_001135461.1| PREDICTED: similar to (159 aa) initn: 641 init1: 641 opt: 655 Z-score: 865.2 bits: 166.0 E(): 1.5e-39 Smith-Waterman score: 655; 89.189% identity (95.495% similar) in 111 aa overlap (22-132:1-110) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK ::::::::::::::::: ::::::::::::::::::::: gi|114 MAEQSDEAVKYYTLEEILKHNHSKSTWLILHHKVYDLTK 10 20 30 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|114 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPETL 40 50 60 70 80 90 130 sh0038 TISSISGCSRCI :..:.. :: . gi|114 -ITTIDSSSREVRDFRGCPLFSSAGCERKTSWAPRITKENSSWKLLRANLPPILLSQASA 100 110 120 130 140 150 >>gi|181392|gb|AAA52165.1| cytochrome b-5 gi|1195869 (98 aa) initn: 650 init1: 650 opt: 650 Z-score: 861.6 bits: 164.7 E(): 2.4e-39 Smith-Waterman score: 650; 100.000% identity (100.000% similar) in 96 aa overlap (22-117:1-96) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK ::::::::::::::::::::::::::::::::::::::: gi|181 MAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK 10 20 30 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPEP 40 50 60 70 80 90 130 sh0038 TISSISGCSRCI >>gi|703083|gb|AAA63169.1| cytochrome b5 (142 aa) initn: 650 init1: 650 opt: 650 Z-score: 859.4 bits: 164.8 E(): 3.2e-39 Smith-Waterman score: 650; 100.000% identity (100.000% similar) in 96 aa overlap (22-117:1-96) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK ::::::::::::::::::::::::::::::::::::::: gi|703 MAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK 10 20 30 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|703 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPEPL 40 50 60 70 80 90 130 sh0038 TISSISGCSRCI gi|703 KAVFKETLITTIDSSSSWWTNWVIPAISAVAVALMYRLYMAED 100 110 120 130 140 >>gi|114673566|ref|XP_001135885.1| PREDICTED: similar to (134 aa) initn: 641 init1: 641 opt: 647 Z-score: 855.8 bits: 164.0 E(): 5e-39 Smith-Waterman score: 647; 90.741% identity (96.296% similar) in 108 aa overlap (22-129:1-107) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK ::::::::::::::::: ::::::::::::::::::::: gi|114 MAEQSDEAVKYYTLEEILKHNHSKSTWLILHHKVYDLTK 10 20 30 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|114 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPETL 40 50 60 70 80 90 130 sh0038 TISSISGCSRCI :..:.. : gi|114 -ITTIDSSSSWWTNWVIPAISAVAVALMYRLYMAED 100 110 120 130 >>gi|109122478|ref|XP_001083378.1| PREDICTED: similar to (134 aa) initn: 640 init1: 640 opt: 645 Z-score: 853.2 bits: 163.6 E(): 7e-39 Smith-Waterman score: 645; 88.889% identity (97.222% similar) in 108 aa overlap (22-129:1-107) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK ::::::::::::::::::::::::::::::::::::::: gi|109 MAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK 10 20 30 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV :::::::::::::::::::::::::::::::::::::::.:::::::::::::.::: .. gi|109 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTYIIGELHPDDRPKLSKPPETL 40 50 60 70 80 90 130 sh0038 TISSISGCSRCI :..... : gi|109 -ITTVDSSSSWWTNWVIPAISAVAVALMYRLYMAED 100 110 120 130 >>gi|226449|prf||1513199A cytochrome b5 (133 aa) initn: 638 init1: 638 opt: 644 Z-score: 851.9 bits: 163.3 E(): 8.3e-39 Smith-Waterman score: 644; 90.654% identity (97.196% similar) in 107 aa overlap (23-129:1-106) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK ::.::::::::::::::::::::::::::::::::::: gi|226 AEESDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK 10 20 30 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: .. gi|226 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPETL 40 50 60 70 80 90 130 sh0038 TISSISGCSRCI :..:.. : gi|226 -ITTIDSSSSWWTNWVIPAISAVVVALMYRLYMAED 100 110 120 130 >>gi|353818|prf||1106188B cytochrome b5 (97 aa) initn: 636 init1: 636 opt: 636 Z-score: 843.4 bits: 161.3 E(): 2.5e-38 Smith-Waterman score: 636; 97.895% identity (100.000% similar) in 95 aa overlap (23-117:1-95) 10 20 30 40 50 60 sh0038 VARSAPPDGAVCAGPGSRRTEMAEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK :::::::::::::::::::::::::::::::::::::: gi|353 AEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTK 10 20 30 70 80 90 100 110 120 sh0038 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNKPPVSV :::::::::::::::::::::::::::::::::::::::::::::::::.:.::::: gi|353 FLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDKPRLNKPPEP 40 50 60 70 80 90 130 sh0038 TISSISGCSRCI 132 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 15:46:32 2008 done: Wed Aug 13 15:49:33 2008 Total Scan time: 545.830 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]