hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090416/iprscan-20090416-17582648/chunk_1/iprscan-20090416-17582648.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sh02014 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03114.8.ls BAR domain 257.4 2.8e-74 1 PF03114.8.fs BAR domain 255.5 1e-73 1 PF00621.11.fs RhoGEF domain 94.8 8e-28 1 PF00621.11.ls RhoGEF domain 96.6 7e-26 1 PF07653.7.fs Variant SH3 domain 66.0 2.3e-18 2 PF07653.7.ls Variant SH3 domain 69.6 9.6e-18 2 PF00018.18.fs SH3 domain 50.5 4.8e-13 2 PF00018.18.ls SH3 domain 53.0 8.9e-13 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00621.11.ls 1/1 488 666 .. 1 207 [] 96.6 7e-26 PF00621.11.fs 1/1 488 666 .. 1 207 [] 94.8 8e-28 PF03114.8.fs 1/1 697 907 .. 1 264 [] 255.5 1e-73 PF03114.8.ls 1/1 697 907 .. 1 264 [] 257.4 2.8e-74 PF00018.18.ls 1/2 988 1046 .. 1 59 [] 4.3 0.0067 PF07653.7.ls 1/2 989 1046 .. 1 69 [] 31.5 2.7e-06 PF07653.7.fs 1/2 989 1046 .. 1 69 [] 29.7 6.4e-08 PF00018.18.fs 2/2 1216 1274 .. 1 59 [] 46.8 5e-12 PF00018.18.ls 2/2 1216 1274 .. 1 59 [] 48.8 1.7e-11 PF07653.7.fs 2/2 1217 1274 .. 1 69 [] 36.2 8.6e-10 PF07653.7.ls 2/2 1217 1274 .. 1 69 [] 38.0 2.9e-08 Alignments of top-scoring domains: PF00621.11.ls: domain 1 of 1, from 488 to 666: score 96.6, E = 7e-26 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v+ Ell+TE+ Y+rdLe+ + m p+++a+ ++ d e +F sh02014 488 VIEELLQTERDYIRDLEMCIERIMVPMQQAQ------VPNIDFEGLF 528 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N+ +++ +++L +Le+ + G++Fl + sh02014 529 GNMQMVIKVSKQLLA-ALEISDAV------------------GPVFLGHR 559 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldevea..ssntgA +e + Y Yc+n++ A+ lle ++ ++ ++ l++ a+ +s+ + sh02014 560 DELEGTYKIYCQNHDEAIALLEI---YEKDEKIQKHLQDSLAdlKSLYN- 605 kddavklt......LqsLLlkPvqRilrYpLLLkeLLkhtpegedssese +++ ++ +L s+L+kPvqR+ rYpLLL eLL tpe ++++++ sh02014 606 -----EWGctnyinLGSFLIKPVQRVMRYPLLLMELLNSTPE--SHPDKV 648 dLkkaldalqdlaksiNe<-* L a a++++ iNe sh02014 649 PLTNAVLAVKEINVNINE 666 PF00621.11.fs: domain 1 of 1, from 488 to 666: score 94.8, E = 8e-28 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v+ Ell+TE+ Y+rdLe+ + m p+++a+ ++ d e +F sh02014 488 VIEELLQTERDYIRDLEMCIERIMVPMQQAQ------VPNIDFEGLF 528 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N+ +++ +++L +Le+ + G++Fl + sh02014 529 GNMQMVIKVSKQLLA-ALEISDAV------------------GPVFLGHR 559 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldevea..ssntgA +e + Y Yc+n++ A+ lle ++ ++ ++ l++ a+ +s+ + sh02014 560 DELEGTYKIYCQNHDEAIALLEI---YEKDEKIQKHLQDSLAdlKSLYN- 605 kddavklt......LqsLLlkPvqRilrYpLLLkeLLkhtpegedssese +++ ++ +L s+L+kPvqR+ rYpLLL eLL tpe ++++++ sh02014 606 -----EWGctnyinLGSFLIKPVQRVMRYPLLLMELLNSTPE--SHPDKV 648 dLkkaldalqdlaksiNe<-* L a a++++ iNe sh02014 649 PLTNAVLAVKEINVNINE 666 PF03114.8.fs: domain 1 of 1, from 697 to 907: score 255.5, E = 1e-73 *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv + K+ +nR+s +lk+ +G+a ++k De+Fee e++f+++e+l+ sh02014 697 IIKK----SNRVSSHLKHLTGFAPQIK--DEVFEETEKNFRMQERLI 737 kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm k+++++++lYlq+++++ + ++ + a +m sh02014 738 KSFIRDLSLYLQHIRESACVKV----------------------VAAVSM 765 qeigeelgddsedPfGkaLekygeamkql.aqlleqldervkqnfldPlt +++++e g++++ e+++++++++++ql+ +++er++++++ Pl+ sh02014 766 WDVCMERGHRDL-------EQFERVHRYIsDQLFTNFKERTERLVISPLN 808 nllekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekklak +ll ++f++++k+++K+ +K+LD++++ +r +k+k+kk+ sh02014 809 QLL-SMFTGPHKLVQKRFDKLLDFYNCTERAEKLKDKKT----------- 846 AdqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaqld eEl+ A++++E+ln++L++eLp++++++++ ++n++++++ea++d sh02014 847 ----LEELQSARNNYEALNAQLLDELPKFHQYAQGLFTNCVHGYAEAHCD 892 fhrqsaqlleqlqqqLdk<-* f +q+ leql++ L++ sh02014 893 FVHQA---LEQLKPLLSL 907 PF03114.8.ls: domain 1 of 1, from 697 to 907: score 257.4, E = 2.8e-74 *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv + K+ +nR+s +lk+ +G+a ++k De+Fee e++f+++e+l+ sh02014 697 IIKK----SNRVSSHLKHLTGFAPQIK--DEVFEETEKNFRMQERLI 737 kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm k+++++++lYlq+++++ + ++ + a +m sh02014 738 KSFIRDLSLYLQHIRESACVKV----------------------VAAVSM 765 qeigeelgddsedPfGkaLekygeamkql.aqlleqldervkqnfldPlt +++++e g++++ e+++++++++++ql+ +++er++++++ Pl+ sh02014 766 WDVCMERGHRDL-------EQFERVHRYIsDQLFTNFKERTERLVISPLN 808 nllekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekklak +ll ++f++++k+++K+ +K+LD++++ +r +k+k+kk+ sh02014 809 QLL-SMFTGPHKLVQKRFDKLLDFYNCTERAEKLKDKKT----------- 846 AdqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaqld eEl+ A++++E+ln++L++eLp++++++++ ++n++++++ea++d sh02014 847 ----LEELQSARNNYEALNAQLLDELPKFHQYAQGLFTNCVHGYAEAHCD 892 fhrqsaqlleqlqqqLdk<-* f +q+ leql++ L++ sh02014 893 FVHQA---LEQLKPLLSL 907 PF00018.18.ls: domain 1 of 2, from 988 to 1046: score 4.3, E = 0.0067 *->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt k ++A ++a ++ ++s+ +GD + v++k+d ++++ W + sh02014 988 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPmgsQNRWLIDNGV- 1033 gGkeGliPsNYVepv<-* +G++ s+++ p+ sh02014 1034 --TKGFVYSSFLKPY 1046 PF07653.7.ls: domain 1 of 2, from 989 to 1046: score 31.5, E = 2.7e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.... +++a ++++a + + sl +Gd+v Vi +k+d+ +++ sh02014 989 LFQAERNFNA-AQDLD------VSLLEGDLVGVI----KKKDPmgsq 1024 gwwegeslggGrrrRGlvPssaveel<-* + w+ ++ g + G+v+ss+++++ sh02014 1025 NRWLIDN--GVTK--GFVYSSFLKPY 1046 PF07653.7.fs: domain 1 of 2, from 989 to 1046: score 29.7, E = 6.4e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.... +++a ++++a + + sl +Gd+v Vi +k+d+ +++ sh02014 989 LFQAERNFNA-AQDLD------VSLLEGDLVGVI----KKKDPmgsq 1024 gwwegeslggGrrrRGlvPssaveel<-* + w+ ++ g + G+v+ss+++++ sh02014 1025 NRWLIDN--GVTK--GFVYSSFLKPY 1046 PF00018.18.fs: domain 2 of 2, from 1216 to 1274: score 46.8, E = 5e-12 *->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt +++ A Y ++ar+++ELs + ++++le +d +++ +WW ++++ sh02014 1216 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVtgnTEWWLAEVN-- 1260 gGkeGliPsNYVepv<-* Gk+G++PsNY+++ sh02014 1261 -GKKGYVPSNYIRKT 1274 PF00018.18.ls: domain 2 of 2, from 1216 to 1274: score 48.8, E = 1.7e-11 *->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt +++ A Y ++ar+++ELs + ++++le +d +++ +WW ++++ sh02014 1216 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVtgnTEWWLAEVN-- 1260 gGkeGliPsNYVepv<-* Gk+G++PsNY+++ sh02014 1261 -GKKGYVPSNYIRKT 1274 PF07653.7.fs: domain 2 of 2, from 1217 to 1274: score 36.2, E = 8.6e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++ a+ ++a +++ne Ls+ +++++k++ ++++ +++ww sh02014 1217 VYFAVYTFKA-RNPNE------LSVSANQKLKIL-EFKDVTGNtEWW 1255 egeslggGrrrRGlvPssaveel<-* ++e+ +G++ G+vPs+++++ sh02014 1256 LAEV--NGKK--GYVPSNYIRKT 1274 PF07653.7.ls: domain 2 of 2, from 1217 to 1274: score 38.0, E = 2.9e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++ a+ ++a +++ne Ls+ +++++k++ ++++ +++ww sh02014 1217 VYFAVYTFKA-RNPNE------LSVSANQKLKIL-EFKDVTGNtEWW 1255 egeslggGrrrRGlvPssaveel<-* ++e+ +G++ G+vPs+++++ sh02014 1256 LAEV--NGKK--GYVPSNYIRKT 1274 //