hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-17582648/chunk_1/iprscan-20090416-17582648.nocrc
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Query sequence: sh02014
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00721                                                 222.7    3.2e-62   1
SM00325                                                 135.6    5.3e-36   1
SM00326                                                  71.3    1.2e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00325    1/1     488   666 ..     1   211 []   135.6  5.3e-36
SM00721    1/1     696   910 ..     1   260 []   222.7  3.2e-62
SM00326    1/2     988  1047 ..     1    58 []    10.3     0.73
SM00326    2/2    1216  1275 ..     1    58 []    61.0  1.6e-13

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 488 to 666: score 135.6, E = 5.3e-36
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v+ ELlqTEr+Y+rdL++++e  + p+++ +       +++ +++ l
     sh02014   488    VIEELLQTERDYIRDLEMCIERIMVPMQQAQ-------VPNIDFEGL 527  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   Fg N++ ++++++++L++Le                        + +g v
     sh02014   528 FG-NMQMVIKVSKQLLAALEIS----------------------DAVGPV 554  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkei...
                   Fl++  + e+  +Y+ Yc+nh++a++ll+  +  +k+++ qk+l+    +
     sh02014   555 FLGH--RDELEGTYKIYCQNHDEAIALLEI-Y--EKDEKIQKHLQDSlad 599  

                   eskpncr.sk.searltLeslLikPvQRltkYpLLLkellkhtppdhedr
                    ++ +++ + +      L s+LikPvQR+++YpLLL ell  tp++h+d+
     sh02014   600 LKSLYNEwGCtN--YINLGSFLIKPVQRVMRYPLLLMELLNSTPESHPDK 647  

                   edLkkAleaikelasqvNe<-*
                     L+ A+ a+ke+   +Ne   
     sh02014   648 VPLTNAVLAVKEINVNINE    666  

SM00721: domain 1 of 1, from 696 to 910: score 222.7, E = 3.2e-62
                   *->glkKaAffnRakqkvgeKvGkaekTkvLDedFeelerrfdtteaete
                      ++ K+  +nR+++++++++G+a + k  De+Fee e++f+++e++++
     sh02014   696    SIIKK--SNRVSSHLKHLTGFAPQIK--DEVFEETEKNFRMQERLIK 738  

                   klqkdtkeylQpnr..palraklasqkklskslgevyeggyPqaeelLae
                   + ++d+++ylQ++r+++++++  a+++  +++++e+++            
     sh02014   739 SFIRDLSLYLQHIResACVKVVAAVSM--WDVCMERGHR----------- 775  

                   amidageglgadsslygkaldklgealkkllqakeslddqvkqtfilpll
                       + e+++  +  y  + d+l  ++k+  +           +++  +l
     sh02014   776 ----DLEQFERVHR-Y--ISDQLFTNFKERTE-----------RLVISPL 807  

                   nfllkefkeikkarkKlerkrLDyDsartklkkakkkkekkkkdeaklak
                   n+ll++f+ ++k ++K+ +k+LD++ +    ++a+k+k+kk         
     sh02014   808 NQLLSMFTGPHKLVQKRFDKLLDFYNCT---ERAEKLKDKK--------- 845  

                   aeEelreAkqefEelneqLveeLpqlidsrvdffvnslqalieaqlryhr
                   + Eel+ A++ +E+ln+qL++eLp+++++++++f n+++ ++ea++++ +
     sh02014   846 TLEELQSARNNYEALNAQLLDELPKFHQYAQGLFTNCVHGYAEAHCDFVH 895  

                   esykllqqlqqqldk<-*
                   ++++ l+ l++ l+    
     sh02014   896 QALEQLKPLLSLLKV    910  

SM00326: domain 1 of 2, from 988 to 1047: score 10.3, E = 0.73
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks....ddgWweGelnrt
                      + ++A  +++a ++ + s+ +GD + v++k ++ ++++ w   ++  
     sh02014   988    KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKdpmgSQNRWLIDNG-- 1032 

                   GkeGlfPsnYVeeie<-*
                     +G++ s+++++++   
     sh02014  1033 VTKGFVYSSFLKPYN    1047 

SM00326: domain 2 of 2, from 1216 to 1275: score 61.0, E = 1.6e-13
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleks....ddgWweGelnrt
                      +++ A+Y ++a+n++ELs+++++++ +le  + +++ +Ww +e+n  
     sh02014  1216    QVYFAVYTFKARNPNELSVSANQKLKILEFKdvtgNTEWWLAEVN-- 1260 

                   GkeGlfPsnYVeeie<-*
                   Gk+G++PsnY+++ e   
     sh02014  1261 GKKGYVPSNYIRKTE    1275 

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