hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-16125045/chunk_1/iprscan-20080813-16125045.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sh02130 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 202.2 4.8e-56 7 SM00406 45.4 7.3e-09 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/7 38 153 .. 1 58 [] 37.5 1.8e-06 SM00406 1/4 48 133 .. 1 76 [] 8.8 0.38 SM00409 2/7 163 288 .. 1 58 [] 32.7 5.2e-05 SM00406 2/4 173 261 .. 1 76 [] 12.3 0.17 SM00406 3/4 284 389 .. 1 76 [] 9.8 0.31 SM00409 3/7 299 405 .. 1 58 [] 27.7 0.0016 SM00409 4/7 429 545 .. 1 58 [] 31.5 0.00011 SM00409 5/7 557 680 .. 1 58 [] 26.0 0.0051 SM00409 6/7 692 817 .. 1 58 [] 25.7 0.0064 SM00409 7/7 830 949 .. 1 58 [] 21.0 0.16 SM00406 4/4 839 921 .. 1 76 [] 14.5 0.1 Alignments of top-scoring domains: SM00409: domain 1 of 7, from 38 to 153: score 37.5, E = 1.8e-06 *->pp.vtvkeGesvtLtC.as........titWy............... +++ eG +v++ C+++++ +++ +++W+ ++++++ + + sh02130 38 KGpLFRAEGYPVSIGCnVTghqgpseqHFQWSvylptnptqevqiis 84 ...............................LtI.nvtpeDsesgGtYtC +++ + +++ ++++ + ++++ L+I+++++ D+ G+Y C sh02130 85 tkdaafsyavytqrvrsgdvyvervqgnsvlLHIsKLQMKDA---GEYEC 131 aat......sgsasseqgttLtVl<-* +++ + +gs+s+ t+L+V sh02130 132 HTPntdekyYGSYSA--KTNLIVI 153 SM00406: domain 1 of 4, from 48 to 133: score 8.8, E = 0.38 *->svtLsCkaSgftf....yvsWvrqpPsstgkgkglewlgy....... v++ C ++g++ ++++++ W P+ + +++ + +++ + sh02130 48 PVSIGCNVTGHQGpseqHFQWSVYLPTNP--TQEVQIISTkdaafsy 92 ...........sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCa +++ ++++ y +Rv++ v L+is L+++D g Y C sh02130 93 avytqrvrsgdVYVERVQGNS----------VLLHISKLQMKDAGEYECH 132 r<-* + sh02130 133 T 133 SM00409: domain 2 of 7, from 163 to 288: score 32.7, E = 5.2e-05 *->pp.vtvkeGesvtLtC.as.........titWy.............. ++++ eGe++ LtC+as+ + +++ ++tWy ++++++++ + sh02130 163 SQtLGKEEGEPLALTCeASkataqhthlSVTWYltqdgggsqateii 209 ..................................LtI.nvtpeDsesgGt + +++ +++ + + ++ + ++ ++++ +L I++++ +D+ G sh02130 210 slskdfilvpgplyterfaasdvqlnklgpttfrLSIeRLQSSDQ---GQ 256 YtCaat............sgsasseqgttLtVl<-* +C+at +++ + +++ + ttL+++ sh02130 257 LFCEATewiqdpdetwmfITKKQT-DQTTLRIQ 288 SM00406: domain 2 of 4, from 173 to 261: score 12.3, E = 0.17 *->svtLsCkaSgftf.....yvsWvrqpPsstgkgkglewlgy...... + L+C+aS t ++++ v+W+ g+ ++ e + +++ sh02130 173 PLALTCEASKATAqhthlSVTWYLTQD--GGGSQATEIISLskdfil 217 ....sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-* +++ y +R+ s l + +++ L+i +L+++D+g +C+ sh02130 218 vpgpLYTERFAASDVQLNKLGPTTFRLSIERLQSSDQGQLFCEA 261 SM00406: domain 3 of 4, from 284 to 389: score 9.8, E = 0.31 *->svtLsCkaSgftf..yvsWvrqpPsstgkgkglewlgy......... +++++ ++ f+ + + + gk+le++ +++++++ sh02130 284 TLRIQPAVKDFQVniTADSLFAE------GKPLELVCLvvssgrdpq 324 ..............................sykgRvtiskdtltrasknd ++ ++++ + + ++ + +++ +++ ++g +++sk + sh02130 325 lqgiwffngteiahidaggvlglkndykerASQGELQVSKL-----GPKA 369 vsLtisnLrpeDtgtYyCar<-* +sL+i +L peD+g Y C + sh02130 370 FSLKIFSLGPEDEGAYRCVV 389 SM00409: domain 3 of 7, from 299 to 405: score 27.7, E = 0.0016 *->pp.vtvkeGesvtLtC.as........titWy............... + + eG +++L C + +++ ++ + W+ +++ + + ++ sh02130 299 TAdSLFAEGKPLELVClVVssgrdpqlQGIWFfngteiahidaggvl 345 ..........................LtI.nvtpeDsesgGtYtCaat.. + +++ + + +++ + ++ +++ +L I ++ peD+ G Y+C++ sh02130 346 glkndykerasqgelqvsklgpkafsLKIfSLGPEDE---GAYRCVVAev 392 sgsasseqgttLtVl<-* ++ ++ + ++ + sh02130 393 MKTRTG--SWQVLQR 405 SM00409: domain 4 of 7, from 429 to 545: score 31.5, E = 0.00011 *->pp.vtvkeGesvtLtC.as......titWy................. ++++v eGe++ + C+a + ++ +++W++ +++++++ + ++ sh02130 429 NKqQVVWEGETLAFLCkAGgaesplSVSWWhiprdqtqpefvagmgq 475 ..............................LtI.nvtpeDsesgGtYtCa ++ + + + + ++ +++++ + + + +L+I+ Ds GtY C+ sh02130 476 dgivqlgasygvpsyhgntrlekmdwatfqLEItFTAITDS---GTYECR 522 at.......sgsasseqgttLtVl<-* ++ ++++ + q + +tV+ sh02130 523 VSeksrnqaRDLSWT-QKISVTVK 545 SM00409: domain 5 of 7, from 557 to 680: score 26.0, E = 0.0051 *->pp.vtvkeGesvtLtC.as..........titWy............. +++ v++ + L+C + + ++ + + t+tW ++ +++ ++ sh02130 557 SRqPQVMLTNTFDLSCvVRagysdlkvplTVTWQfqpasshifhqli 603 ...............................LtI.nvtpeDsesgGtYtC + +++++ ++ ++ +++++ +++ +++L ++++t+e + G+Y+C sh02130 604 rithngtiewgnflsrfqkktkvsqslfrsqLLVhDATEEET---GVYQC 650 aat.............sgsasseqgttLtVl<-* +++ ++++ +++++ sa s ++ ++ V+ sh02130 651 EVEvydrnslynnrppRASAIS-HPLRIAVT 680 SM00409: domain 6 of 7, from 692 to 817: score 25.7, E = 0.0064 *->pp.vtvkeGesvtLtC.as.........titWy.............. ++ ++ + ++ ++C++ + ++++ i Wy ++ +++ + + sh02130 692 SQvQELSINSNTDIECsILsrsngnlqlAIIWYfspvstnaswlkil 738 ..................................LtI.nvtpeDsesgGt ++++ ++++ ++++++++ ++ + +++ +L+I nv+ +D G sh02130 739 emdqtnviktgdefhtpqrkqkfhtekvsqdlfqLHIlNVEDSDR---GK 785 YtCaat............sgsasseqgttLtVl<-* Y Ca++ +++++ ++ g+++s t+L+ + sh02130 786 YHCAVEewllstngtwhkLGEKKS-GLTELKLK 817 SM00409: domain 7 of 7, from 830 to 949: score 21.0, E = 0.16 *->ppvtvkeGesvtLtC.as.........titWy............... v e v ++C+ ++ +++ + ++ Wy ++ +++++ + + sh02130 830 WTENVTEHREVAIRCsLEsvgssatlySVMWYwnrensgskllvhlq 876 ...........................LtI.nvtpeDsesgGtYtCaat. +++ + + +++ + ++++++ L +++v++eD+ G Y+C++ sh02130 877 hdglleygeeglrrhlhcyrssstdfvLKLhQVEMEDA---GMYWCRVAe 923 ............sgsasseqgttLtVl<-* ++++++ + s++s q LtVl sh02130 924 wqlhghpskwinQASDES-QRMVLTVL 949 SM00406: domain 4 of 4, from 839 to 921: score 14.5, E = 0.1 *->svtLsCkaSgftf.......yvsWvrqpPsstgkgkglewlgy.... v + C++ ++ + + ++W r+ g+ l + + +++ sh02130 839 EVAIRCSLESVGSsatlysvMWYWNRENS-----GSKLLVHLQhdgl 880 ......sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-* + ++++++ + + ++ s++d+ L+++ +++eD g+Y C + sh02130 881 leygeeGLRRHLHCYRS-----SSTDFVLKLHQVEMEDAGMYWCRV 921 //