hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-16125045/chunk_1/iprscan-20080813-16125045.nocrc
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Query sequence: sh02130
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00409                                                 202.2    4.8e-56   7
SM00406                                                  45.4    7.3e-09   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/7      38   153 ..     1    58 []    37.5  1.8e-06
SM00406    1/4      48   133 ..     1    76 []     8.8     0.38
SM00409    2/7     163   288 ..     1    58 []    32.7  5.2e-05
SM00406    2/4     173   261 ..     1    76 []    12.3     0.17
SM00406    3/4     284   389 ..     1    76 []     9.8     0.31
SM00409    3/7     299   405 ..     1    58 []    27.7   0.0016
SM00409    4/7     429   545 ..     1    58 []    31.5  0.00011
SM00409    5/7     557   680 ..     1    58 []    26.0   0.0051
SM00409    6/7     692   817 ..     1    58 []    25.7   0.0064
SM00409    7/7     830   949 ..     1    58 []    21.0     0.16
SM00406    4/4     839   921 ..     1    76 []    14.5      0.1

Alignments of top-scoring domains:
SM00409: domain 1 of 7, from 38 to 153: score 37.5, E = 1.8e-06
                   *->pp.vtvkeGesvtLtC.as........titWy...............
                       +++   eG +v++ C+++++ +++  +++W+   ++++++  +  +
     sh02130    38    KGpLFRAEGYPVSIGCnVTghqgpseqHFQWSvylptnptqevqiis 84   

                   ...............................LtI.nvtpeDsesgGtYtC
                   +++   +    +++ ++++    + ++++  L+I+++++ D+   G+Y C
     sh02130    85 tkdaafsyavytqrvrsgdvyvervqgnsvlLHIsKLQMKDA---GEYEC 131  

                   aat......sgsasseqgttLtVl<-*
                      +++ + +gs+s+   t+L+V    
     sh02130   132 HTPntdekyYGSYSA--KTNLIVI    153  

SM00406: domain 1 of 4, from 48 to 133: score 8.8, E = 0.38
                   *->svtLsCkaSgftf....yvsWvrqpPsstgkgkglewlgy.......
                       v++ C ++g++ ++++++ W    P+ +   +++  + +++   + 
     sh02130    48    PVSIGCNVTGHQGpseqHFQWSVYLPTNP--TQEVQIISTkdaafsy 92   

                   ...........sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCa
                      +++ ++++ y +Rv++            v L+is L+++D g Y C 
     sh02130    93 avytqrvrsgdVYVERVQGNS----------VLLHISKLQMKDAGEYECH 132  

                   r<-*
                   +   
     sh02130   133 T    133  

SM00409: domain 2 of 7, from 163 to 288: score 32.7, E = 5.2e-05
                   *->pp.vtvkeGesvtLtC.as.........titWy..............
                      ++++   eGe++ LtC+as+ +  +++ ++tWy ++++++++ +   
     sh02130   163    SQtLGKEEGEPLALTCeASkataqhthlSVTWYltqdgggsqateii 209  

                   ..................................LtI.nvtpeDsesgGt
                   + +++    +++  + +   ++ + ++ ++++ +L I++++ +D+   G 
     sh02130   210 slskdfilvpgplyterfaasdvqlnklgpttfrLSIeRLQSSDQ---GQ 256  

                   YtCaat............sgsasseqgttLtVl<-*
                    +C+at    +++ +     +++  + ttL+++   
     sh02130   257 LFCEATewiqdpdetwmfITKKQT-DQTTLRIQ    288  

SM00406: domain 2 of 4, from 173 to 261: score 12.3, E = 0.17
                   *->svtLsCkaSgftf.....yvsWvrqpPsstgkgkglewlgy......
                       + L+C+aS  t ++++  v+W+       g+ ++ e +  +++   
     sh02130   173    PLALTCEASKATAqhthlSVTWYLTQD--GGGSQATEIISLskdfil 217  

                   ....sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
                    +++ y +R+  s   l   + +++ L+i +L+++D+g  +C+    
     sh02130   218 vpgpLYTERFAASDVQLNKLGPTTFRLSIERLQSSDQGQLFCEA    261  

SM00406: domain 3 of 4, from 284 to 389: score 9.8, E = 0.31
                   *->svtLsCkaSgftf..yvsWvrqpPsstgkgkglewlgy.........
                      +++++  ++ f+ + +   +         gk+le++    +++++++
     sh02130   284    TLRIQPAVKDFQVniTADSLFAE------GKPLELVCLvvssgrdpq 324  

                   ..............................sykgRvtiskdtltrasknd
                    ++    ++++  + + ++  + +++ +++ ++g +++sk      +   
     sh02130   325 lqgiwffngteiahidaggvlglkndykerASQGELQVSKL-----GPKA 369  

                   vsLtisnLrpeDtgtYyCar<-*
                   +sL+i +L peD+g Y C +   
     sh02130   370 FSLKIFSLGPEDEGAYRCVV    389  

SM00409: domain 3 of 7, from 299 to 405: score 27.7, E = 0.0016
                   *->pp.vtvkeGesvtLtC.as........titWy...............
                        + +  eG +++L C + +++ ++  +  W+ +++   + + ++  
     sh02130   299    TAdSLFAEGKPLELVClVVssgrdpqlQGIWFfngteiahidaggvl 345  

                   ..........................LtI.nvtpeDsesgGtYtCaat..
                   + +++ + + +++  + ++ +++  +L I ++ peD+   G Y+C++   
     sh02130   346 glkndykerasqgelqvsklgpkafsLKIfSLGPEDE---GAYRCVVAev 392  

                   sgsasseqgttLtVl<-*
                    ++ ++  + ++  +   
     sh02130   393 MKTRTG--SWQVLQR    405  

SM00409: domain 4 of 7, from 429 to 545: score 31.5, E = 0.00011
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                       ++++v eGe++ + C+a +  ++ +++W++ +++++++    + ++
     sh02130   429    NKqQVVWEGETLAFLCkAGgaesplSVSWWhiprdqtqpefvagmgq 475  

                   ..............................LtI.nvtpeDsesgGtYtCa
                   ++  + + + + ++ +++++  + +  + +L+I+     Ds   GtY C+
     sh02130   476 dgivqlgasygvpsyhgntrlekmdwatfqLEItFTAITDS---GTYECR 522  

                   at.......sgsasseqgttLtVl<-*
                   ++ ++++      +  q + +tV+   
     sh02130   523 VSeksrnqaRDLSWT-QKISVTVK    545  

SM00409: domain 5 of 7, from 557 to 680: score 26.0, E = 0.0051
                   *->pp.vtvkeGesvtLtC.as..........titWy.............
                      +++  v++  +  L+C +  + ++ + + t+tW  ++ +++  ++  
     sh02130   557    SRqPQVMLTNTFDLSCvVRagysdlkvplTVTWQfqpasshifhqli 603  

                   ...............................LtI.nvtpeDsesgGtYtC
                   + +++++   ++  ++ +++++ +++  +++L ++++t+e +   G+Y+C
     sh02130   604 rithngtiewgnflsrfqkktkvsqslfrsqLLVhDATEEET---GVYQC 650  

                   aat.............sgsasseqgttLtVl<-*
                   +++  ++++  +++++  sa s ++ ++ V+   
     sh02130   651 EVEvydrnslynnrppRASAIS-HPLRIAVT    680  

SM00409: domain 6 of 7, from 692 to 817: score 25.7, E = 0.0064
                   *->pp.vtvkeGesvtLtC.as.........titWy..............
                      ++ ++ +  ++  ++C++ + ++++    i Wy ++ +++ +  +  
     sh02130   692    SQvQELSINSNTDIECsILsrsngnlqlAIIWYfspvstnaswlkil 738  

                   ..................................LtI.nvtpeDsesgGt
                     ++++  ++++  ++++++++ ++ + +++  +L+I nv+ +D    G 
     sh02130   739 emdqtnviktgdefhtpqrkqkfhtekvsqdlfqLHIlNVEDSDR---GK 785  

                   YtCaat............sgsasseqgttLtVl<-*
                   Y Ca++    +++++ ++ g+++s   t+L+ +   
     sh02130   786 YHCAVEewllstngtwhkLGEKKS-GLTELKLK    817  

SM00409: domain 7 of 7, from 830 to 949: score 21.0, E = 0.16
                   *->ppvtvkeGesvtLtC.as.........titWy...............
                          v e   v ++C+ ++ +++ +  ++ Wy ++ +++++   + +
     sh02130   830    WTENVTEHREVAIRCsLEsvgssatlySVMWYwnrensgskllvhlq 876  

                   ...........................LtI.nvtpeDsesgGtYtCaat.
                   +++    +  + +++ +  ++++++  L +++v++eD+   G Y+C++  
     sh02130   877 hdglleygeeglrrhlhcyrssstdfvLKLhQVEMEDA---GMYWCRVAe 923  

                   ............sgsasseqgttLtVl<-*
                      ++++++  +  s++s q   LtVl   
     sh02130   924 wqlhghpskwinQASDES-QRMVLTVL    949  

SM00406: domain 4 of 4, from 839 to 921: score 14.5, E = 0.1
                   *->svtLsCkaSgftf.......yvsWvrqpPsstgkgkglewlgy....
                       v + C++    ++ +  +  ++W r+       g+ l + + +++ 
     sh02130   839    EVAIRCSLESVGSsatlysvMWYWNRENS-----GSKLLVHLQhdgl 880  

                   ......sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
                    + ++++++  + + ++     s++d+ L+++ +++eD g+Y C +   
     sh02130   881 leygeeGLRRHLHCYRS-----SSTDFVLKLHQVEMEDAGMYWCRV    921  

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