hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-16125045/chunk_1/iprscan-20080813-16125045.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: sh02130
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00409 202.2 4.8e-56 7
SM00406 45.4 7.3e-09 4
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00409 1/7 38 153 .. 1 58 [] 37.5 1.8e-06
SM00406 1/4 48 133 .. 1 76 [] 8.8 0.38
SM00409 2/7 163 288 .. 1 58 [] 32.7 5.2e-05
SM00406 2/4 173 261 .. 1 76 [] 12.3 0.17
SM00406 3/4 284 389 .. 1 76 [] 9.8 0.31
SM00409 3/7 299 405 .. 1 58 [] 27.7 0.0016
SM00409 4/7 429 545 .. 1 58 [] 31.5 0.00011
SM00409 5/7 557 680 .. 1 58 [] 26.0 0.0051
SM00409 6/7 692 817 .. 1 58 [] 25.7 0.0064
SM00409 7/7 830 949 .. 1 58 [] 21.0 0.16
SM00406 4/4 839 921 .. 1 76 [] 14.5 0.1
Alignments of top-scoring domains:
SM00409: domain 1 of 7, from 38 to 153: score 37.5, E = 1.8e-06
*->pp.vtvkeGesvtLtC.as........titWy...............
+++ eG +v++ C+++++ +++ +++W+ ++++++ + +
sh02130 38 KGpLFRAEGYPVSIGCnVTghqgpseqHFQWSvylptnptqevqiis 84
...............................LtI.nvtpeDsesgGtYtC
+++ + +++ ++++ + ++++ L+I+++++ D+ G+Y C
sh02130 85 tkdaafsyavytqrvrsgdvyvervqgnsvlLHIsKLQMKDA---GEYEC 131
aat......sgsasseqgttLtVl<-*
+++ + +gs+s+ t+L+V
sh02130 132 HTPntdekyYGSYSA--KTNLIVI 153
SM00406: domain 1 of 4, from 48 to 133: score 8.8, E = 0.38
*->svtLsCkaSgftf....yvsWvrqpPsstgkgkglewlgy.......
v++ C ++g++ ++++++ W P+ + +++ + +++ +
sh02130 48 PVSIGCNVTGHQGpseqHFQWSVYLPTNP--TQEVQIISTkdaafsy 92
...........sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCa
+++ ++++ y +Rv++ v L+is L+++D g Y C
sh02130 93 avytqrvrsgdVYVERVQGNS----------VLLHISKLQMKDAGEYECH 132
r<-*
+
sh02130 133 T 133
SM00409: domain 2 of 7, from 163 to 288: score 32.7, E = 5.2e-05
*->pp.vtvkeGesvtLtC.as.........titWy..............
++++ eGe++ LtC+as+ + +++ ++tWy ++++++++ +
sh02130 163 SQtLGKEEGEPLALTCeASkataqhthlSVTWYltqdgggsqateii 209
..................................LtI.nvtpeDsesgGt
+ +++ +++ + + ++ + ++ ++++ +L I++++ +D+ G
sh02130 210 slskdfilvpgplyterfaasdvqlnklgpttfrLSIeRLQSSDQ---GQ 256
YtCaat............sgsasseqgttLtVl<-*
+C+at +++ + +++ + ttL+++
sh02130 257 LFCEATewiqdpdetwmfITKKQT-DQTTLRIQ 288
SM00406: domain 2 of 4, from 173 to 261: score 12.3, E = 0.17
*->svtLsCkaSgftf.....yvsWvrqpPsstgkgkglewlgy......
+ L+C+aS t ++++ v+W+ g+ ++ e + +++
sh02130 173 PLALTCEASKATAqhthlSVTWYLTQD--GGGSQATEIISLskdfil 217
....sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
+++ y +R+ s l + +++ L+i +L+++D+g +C+
sh02130 218 vpgpLYTERFAASDVQLNKLGPTTFRLSIERLQSSDQGQLFCEA 261
SM00406: domain 3 of 4, from 284 to 389: score 9.8, E = 0.31
*->svtLsCkaSgftf..yvsWvrqpPsstgkgkglewlgy.........
+++++ ++ f+ + + + gk+le++ +++++++
sh02130 284 TLRIQPAVKDFQVniTADSLFAE------GKPLELVCLvvssgrdpq 324
..............................sykgRvtiskdtltrasknd
++ ++++ + + ++ + +++ +++ ++g +++sk +
sh02130 325 lqgiwffngteiahidaggvlglkndykerASQGELQVSKL-----GPKA 369
vsLtisnLrpeDtgtYyCar<-*
+sL+i +L peD+g Y C +
sh02130 370 FSLKIFSLGPEDEGAYRCVV 389
SM00409: domain 3 of 7, from 299 to 405: score 27.7, E = 0.0016
*->pp.vtvkeGesvtLtC.as........titWy...............
+ + eG +++L C + +++ ++ + W+ +++ + + ++
sh02130 299 TAdSLFAEGKPLELVClVVssgrdpqlQGIWFfngteiahidaggvl 345
..........................LtI.nvtpeDsesgGtYtCaat..
+ +++ + + +++ + ++ +++ +L I ++ peD+ G Y+C++
sh02130 346 glkndykerasqgelqvsklgpkafsLKIfSLGPEDE---GAYRCVVAev 392
sgsasseqgttLtVl<-*
++ ++ + ++ +
sh02130 393 MKTRTG--SWQVLQR 405
SM00409: domain 4 of 7, from 429 to 545: score 31.5, E = 0.00011
*->pp.vtvkeGesvtLtC.as......titWy.................
++++v eGe++ + C+a + ++ +++W++ +++++++ + ++
sh02130 429 NKqQVVWEGETLAFLCkAGgaesplSVSWWhiprdqtqpefvagmgq 475
..............................LtI.nvtpeDsesgGtYtCa
++ + + + + ++ +++++ + + + +L+I+ Ds GtY C+
sh02130 476 dgivqlgasygvpsyhgntrlekmdwatfqLEItFTAITDS---GTYECR 522
at.......sgsasseqgttLtVl<-*
++ ++++ + q + +tV+
sh02130 523 VSeksrnqaRDLSWT-QKISVTVK 545
SM00409: domain 5 of 7, from 557 to 680: score 26.0, E = 0.0051
*->pp.vtvkeGesvtLtC.as..........titWy.............
+++ v++ + L+C + + ++ + + t+tW ++ +++ ++
sh02130 557 SRqPQVMLTNTFDLSCvVRagysdlkvplTVTWQfqpasshifhqli 603
...............................LtI.nvtpeDsesgGtYtC
+ +++++ ++ ++ +++++ +++ +++L ++++t+e + G+Y+C
sh02130 604 rithngtiewgnflsrfqkktkvsqslfrsqLLVhDATEEET---GVYQC 650
aat.............sgsasseqgttLtVl<-*
+++ ++++ +++++ sa s ++ ++ V+
sh02130 651 EVEvydrnslynnrppRASAIS-HPLRIAVT 680
SM00409: domain 6 of 7, from 692 to 817: score 25.7, E = 0.0064
*->pp.vtvkeGesvtLtC.as.........titWy..............
++ ++ + ++ ++C++ + ++++ i Wy ++ +++ + +
sh02130 692 SQvQELSINSNTDIECsILsrsngnlqlAIIWYfspvstnaswlkil 738
..................................LtI.nvtpeDsesgGt
++++ ++++ ++++++++ ++ + +++ +L+I nv+ +D G
sh02130 739 emdqtnviktgdefhtpqrkqkfhtekvsqdlfqLHIlNVEDSDR---GK 785
YtCaat............sgsasseqgttLtVl<-*
Y Ca++ +++++ ++ g+++s t+L+ +
sh02130 786 YHCAVEewllstngtwhkLGEKKS-GLTELKLK 817
SM00409: domain 7 of 7, from 830 to 949: score 21.0, E = 0.16
*->ppvtvkeGesvtLtC.as.........titWy...............
v e v ++C+ ++ +++ + ++ Wy ++ +++++ + +
sh02130 830 WTENVTEHREVAIRCsLEsvgssatlySVMWYwnrensgskllvhlq 876
...........................LtI.nvtpeDsesgGtYtCaat.
+++ + + +++ + ++++++ L +++v++eD+ G Y+C++
sh02130 877 hdglleygeeglrrhlhcyrssstdfvLKLhQVEMEDA---GMYWCRVAe 923
............sgsasseqgttLtVl<-*
++++++ + s++s q LtVl
sh02130 924 wqlhghpskwinQASDES-QRMVLTVL 949
SM00406: domain 4 of 4, from 839 to 921: score 14.5, E = 0.1
*->svtLsCkaSgftf.......yvsWvrqpPsstgkgkglewlgy....
v + C++ ++ + + ++W r+ g+ l + + +++
sh02130 839 EVAIRCSLESVGSsatlysvMWYWNRENS-----GSKLLVHLQhdgl 880
......sykgRvtiskdtltraskndvsLtisnLrpeDtgtYyCar<-*
+ ++++++ + + ++ s++d+ L+++ +++eD g+Y C +
sh02130 881 leygeeGLRRHLHCYRS-----SSTDFVLKLHQVEMEDAGMYWCRV 921
//