hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-16310264/chunk_1/iprscan-20080813-16310264.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sh02340 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 176.9 4.5e-50 6 PF00023.20.fs Ankyrin repeat 176.1 7.8e-50 6 PF00536.20.fs SAM domain (Sterile alpha motif) 160.8 1e-46 2 PF00536.20.ls SAM domain (Sterile alpha motif) 164.7 2.1e-46 2 PF07647.7.fs SAM domain (Sterile alpha motif) 96.2 1.5e-27 2 PF07647.7.ls SAM domain (Sterile alpha motif) 100.1 6.1e-27 2 PF07653.7.fs Variant SH3 domain 23.1 5.4e-06 1 PF07653.7.ls Variant SH3 domain 24.9 0.00027 1 PF00018.18.ls SH3 domain 14.8 0.00053 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/6 172 204 .. 1 33 [] 33.9 1.8e-08 PF00023.20.ls 1/6 172 204 .. 1 33 [] 35.9 1.3e-07 PF00023.20.ls 2/6 205 237 .. 1 33 [] 28.5 2.2e-05 PF00023.20.fs 2/6 205 237 .. 1 33 [] 26.5 2.1e-06 PF00023.20.ls 3/6 238 270 .. 1 33 [] 38.4 2.3e-08 PF00023.20.fs 3/6 238 270 .. 1 33 [] 36.4 3.6e-09 PF00023.20.ls 4/6 271 303 .. 1 33 [] 8.5 1.7 PF00023.20.fs 4/6 271 293 .. 1 23 [. 9.2 0.14 PF00023.20.ls 5/6 312 344 .. 1 33 [] 39.6 1e-08 PF00023.20.fs 5/6 312 344 .. 1 33 [] 37.6 1.7e-09 PF00023.20.ls 6/6 347 376 .. 1 33 [] 26.1 0.00011 PF00023.20.fs 6/6 347 376 .. 4 33 .] 32.6 4.2e-08 PF00018.18.ls 1/1 408 469 .. 1 59 [] 14.8 0.00053 PF07653.7.ls 1/1 409 469 .. 1 69 [] 24.9 0.00027 PF07653.7.fs 1/1 409 469 .. 1 69 [] 23.1 5.4e-06 PF07647.7.fs 1/2 610 676 .. 1 72 [] 50.0 5.2e-14 PF07647.7.ls 1/2 610 676 .. 1 72 [] 52.0 1.9e-12 PF00536.20.fs 1/2 611 674 .. 1 65 [] 81.9 1.7e-23 PF00536.20.ls 1/2 611 674 .. 1 65 [] 83.9 4.6e-22 PF00536.20.ls 2/2 680 744 .. 1 65 [] 80.8 3.8e-21 PF07647.7.ls 2/2 680 746 .. 1 72 [] 48.1 2.7e-11 PF00536.20.fs 2/2 680 744 .. 1 65 [] 78.8 1.4e-22 PF07647.7.fs 2/2 680 746 .. 1 72 [] 46.2 6.9e-13 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 6, from 172 to 204: score 33.9, E = 1.8e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dGf++LH+Aal g+le++ lLl++ A ++++d sh02340 172 DGFSALHHAALGGSLELIALLLEAQATVDIKDS 204 PF00023.20.ls: domain 1 of 6, from 172 to 204: score 35.9, E = 1.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dGf++LH+Aal g+le++ lLl++ A ++++d sh02340 172 DGFSALHHAALGGSLELIALLLEAQATVDIKDS 204 PF00023.20.ls: domain 2 of 6, from 205 to 237: score 28.5, E = 2.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ PLH+Aa g+le v+lLl + A +na sh02340 205 NGMRPLHYAAWQGRLEPVRLLLRASAAVNAASL 237 PF00023.20.fs: domain 2 of 6, from 205 to 237: score 26.5, E = 2.1e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ PLH+Aa g+le v+lLl + A +na sh02340 205 NGMRPLHYAAWQGRLEPVRLLLRASAAVNAASL 237 PF00023.20.ls: domain 3 of 6, from 238 to 270: score 38.4, E = 2.3e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ PLHlAa++g++ev ++Ll++ +++++++ sh02340 238 DGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNK 270 PF00023.20.fs: domain 3 of 6, from 238 to 270: score 36.4, E = 3.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ PLHlAa++g++ev ++Ll++ +++++++ sh02340 238 DGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNK 270 PF00023.20.ls: domain 4 of 6, from 271 to 303: score 8.5, E = 1.7 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPL lA++ g+l+v++lLl+ ++ + sh02340 271 AKKTPLDLACEFGRLKVAQLLLNSHLCVALLEG 303 PF00023.20.fs: domain 4 of 6, from 271 to 293: score 9.2, E = 0.14 *->dGfTPLHlAalrgnlevvklLls<-* TPL lA++ g+l+v++lLl+ sh02340 271 AKKTPLDLACEFGRLKVAQLLLN 293 PF00023.20.ls: domain 5 of 6, from 312 to 344: score 39.6, E = 1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + TPLHlAa++g+ ev++ Ll +G ++n q++ sh02340 312 NYTTPLHLAAKNGHREVIRQLLRAGIEINRQTK 344 PF00023.20.fs: domain 5 of 6, from 312 to 344: score 37.6, E = 1.7e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + TPLHlAa++g+ ev++ Ll +G ++n q++ sh02340 312 NYTTPLHLAAKNGHREVIRQLLRAGIEINRQTK 344 PF00023.20.ls: domain 6 of 6, from 347 to 376: score 26.1, E = 0.00011 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* T+LH Aal+g +evv+lLl+ G d+n+++ sh02340 347 ---TALHEAALYGKTEVVRLLLEGGVDVNIRNT 376 PF00023.20.fs: domain 6 of 6, from 347 to 376: score 32.6, E = 4.2e-08 *->TPLHlAalrgnlevvklLlsqGAdlnaqdd<-* T+LH Aal+g +evv+lLl+ G d+n+++ sh02340 347 TALHEAALYGKTEVVRLLLEGGVDVNIRNT 376 PF00018.18.ls: domain 1 of 1, from 408 to 469: score 14.8, E = 0.00053 *->kkvvALYDYeare.sdELsFkkGDvitvleksddpgWWkgrlkgtgG kv+AL D+ +++ L + GDvitvle+++d g Wkg + + sh02340 408 LKVRALKDFWNLHdPTALNVRAGDVITVLEQHPD-GRWKGHIHESQR 453 ...keGliPsNYVepv<-* ++++ G++P Ve v sh02340 454 gtdRIGYFPPGIVEVV 469 PF07653.7.ls: domain 1 of 1, from 409 to 469: score 24.9, E = 0.00027 *->ygraiedyvaAt.dknenleeeeLslkkGdvvkVidv.ggskdddgw ++ra++d+ + +d+++ L++++Gdv+ V+ ++ ++ ++ g+ sh02340 409 KVRALKDFWN-LhDPTA------LNVRAGDVITVL-EqHPDGRWKGH 447 .wegeslggGrrrRGlvPssaveel<-* e + g r G++P+ +ve++ sh02340 448 iHESQR-GTDRI--GYFPPGIVEVV 469 PF07653.7.fs: domain 1 of 1, from 409 to 469: score 23.1, E = 5.4e-06 *->ygraiedyvaAt.dknenleeeeLslkkGdvvkVidv.ggskdddgw ++ra++d+ + +d+++ L++++Gdv+ V+ ++ ++ ++ g+ sh02340 409 KVRALKDFWN-LhDPTA------LNVRAGDVITVL-EqHPDGRWKGH 447 .wegeslggGrrrRGlvPssaveel<-* e + g r G++P+ +ve++ sh02340 448 iHESQR-GTDRI--GYFPPGIVEVV 469 PF07647.7.fs: domain 1 of 2, from 610 to 676: score 50.0, E = 5.2e-14 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa e ++++ +++WL++ l + Y+ F+++g++ + r+t edL sh02340 610 LEGKDAQAIHNWLSEFQL-EGYTAHFLQAGYDV-PTI-SRMTPEDL- 652 klalGitsvghRkkilkkiqelkqq<-* + a+G+t++ghRkki ++i +l sh02340 653 T-AIGVTKPGHRKKIASEIAQLSIA 676 PF07647.7.ls: domain 1 of 2, from 610 to 676: score 52.0, E = 1.9e-12 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa e ++++ +++WL++ l + Y+ F+++g++ + r+t edL sh02340 610 LEGKDAQAIHNWLSEFQL-EGYTAHFLQAGYDV-PTI-SRMTPEDL- 652 klalGitsvghRkkilkkiqelkqq<-* + a+G+t++ghRkki ++i +l sh02340 653 T-AIGVTKPGHRKKIASEIAQLSIA 676 PF00536.20.fs: domain 1 of 2, from 611 to 674: score 81.9, E = 1.7e-23 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG +g++ + + +WL ++ l+ Y+ +Fl+agy d+ t++++t+eDL+++G sh02340 611 EGKDAQAIHNWLSEFQLEGYTAHFLQAGY-DVPTISRMTPEDLTAIG 656 vtllGHrkKIlssIqgLk<-* vt++GHrkKI+s I +L sh02340 657 VTKPGHRKKIASEIAQLS 674 PF00536.20.ls: domain 1 of 2, from 611 to 674: score 83.9, E = 4.6e-22 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG +g++ + + +WL ++ l+ Y+ +Fl+agy d+ t++++t+eDL+++G sh02340 611 EGKDAQAIHNWLSEFQLEGYTAHFLQAGY-DVPTISRMTPEDLTAIG 656 vtllGHrkKIlssIqgLk<-* vt++GHrkKI+s I +L sh02340 657 VTKPGHRKKIASEIAQLS 674 PF00536.20.ls: domain 2 of 2, from 680 to 744: score 80.8, E = 3.8e-21 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + + ++ eWL ++gl+qY ++ +s+gy+++ ++ lt+e+L+++G sh02340 680 PSYIPTDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIG 726 vtllGHrkKIlssIqgLk<-* v++lGH+kK+++ +++L sh02340 727 VNKLGHQKKLMLGVKRLA 744 PF07647.7.ls: domain 2 of 2, from 680 to 746: score 48.1, E = 2.7e-11 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ + ++ eWL ++gl +qY + + g++++ l+ + lt e+L sh02340 680 PSYIPT-DLLEWLCALGL-PQYHKQLVSSGYDSMGLV-ADLTWEEL- 722 klalGitsvghRkkilkkiqelkqq<-* + ++G++++gh+kk++ ++++l + sh02340 723 Q-EIGVNKLGHQKKLMLGVKRLAEL 746 PF00536.20.fs: domain 2 of 2, from 680 to 744: score 78.8, E = 1.4e-22 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG + + ++ eWL ++gl+qY ++ +s+gy+++ ++ lt+e+L+++G sh02340 680 PSYIPTDLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIG 726 vtllGHrkKIlssIqgLk<-* v++lGH+kK+++ +++L sh02340 727 VNKLGHQKKLMLGVKRLA 744 PF07647.7.fs: domain 2 of 2, from 680 to 746: score 46.2, E = 6.9e-13 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa +++ + ++ eWL ++gl +qY + + g++++ l+ + lt e+L sh02340 680 PSYIPT-DLLEWLCALGL-PQYHKQLVSSGYDSMGLV-ADLTWEEL- 722 klalGitsvghRkkilkkiqelkqq<-* + ++G++++gh+kk++ ++++l + sh02340 723 Q-EIGVNKLGHQKKLMLGVKRLAEL 746 //