# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osh02382.fasta.nr -Q sh02382.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sh02382, 229 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842707 sequences Expectation_n fit: rho(ln(x))= 5.0245+/-0.000184; mu= 9.9004+/- 0.010 mean_var=71.5164+/-13.839, 0's: 41 Z-trim: 41 B-trim: 3 in 1/66 Lambda= 0.151660 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088828|dbj|BAD92861.1| interferon regulatory ( 229) 1589 356.0 2.4e-96 gi|194385000|dbj|BAG60912.1| unnamed protein produ ( 112) 316 77.3 9.7e-13 gi|58737031|dbj|BAD89424.1| interferon regulatory ( 250) 301 74.3 1.7e-11 gi|20178295|sp|P10914|IRF1_HUMAN Interferon regula ( 325) 301 74.4 2.1e-11 gi|54696374|gb|AAV38559.1| interferon regulatory f ( 326) 301 74.4 2.1e-11 gi|57232584|gb|AAW47937.1| IRF-1 [Tupaia belangeri ( 105) 292 72.0 3.5e-11 gi|109078544|ref|XP_001104048.1| PREDICTED: interf ( 250) 293 72.5 5.8e-11 gi|114601726|ref|XP_001150404.1| PREDICTED: simila ( 404) 295 73.1 6.2e-11 gi|109078540|ref|XP_001104217.1| PREDICTED: interf ( 325) 293 72.6 7.1e-11 gi|159461523|gb|ABW96798.1| interferon regulatory ( 326) 293 72.6 7.1e-11 gi|184185448|gb|ACC68854.1| interferon regulatory ( 328) 292 72.4 8.3e-11 gi|167045853|gb|ABZ10520.1| interferon regulatory ( 324) 282 70.2 3.8e-10 gi|37050905|emb|CAE47553.1| interferon regulatory ( 258) 275 68.6 9.2e-10 gi|122146577|sp|A0FIN4|IRF1_PIG Interferon regulat ( 322) 275 68.7 1.1e-09 gi|112790135|gb|ABI21827.1| interferon regulatory ( 157) 269 67.1 1.6e-09 gi|13924496|gb|AAK49031.1|AF241265_1 interferon re ( 168) 269 67.1 1.6e-09 gi|88909160|sp|Q3SZP0|IRF1_BOVIN Interferon regula ( 322) 270 67.6 2.3e-09 gi|28798059|gb|AAO46998.1| interferon regulatory f ( 322) 270 67.6 2.3e-09 gi|12658433|gb|AAK01138.1|AF331970_1 interferon re ( 322) 269 67.3 2.7e-09 gi|170649700|gb|ACB21282.1| interferon regulatory ( 321) 266 66.7 4.2e-09 gi|149726381|ref|XP_001504495.1| PREDICTED: simila ( 322) 258 64.9 1.4e-08 gi|73971120|ref|XP_538621.2| PREDICTED: similar to ( 321) 256 64.5 1.9e-08 gi|68359699|gb|AAY96753.1| interferon regulatory f ( 328) 255 64.3 2.3e-08 gi|190402277|gb|ACE77686.1| interferon regulatory ( 325) 246 62.3 8.9e-08 gi|148701621|gb|EDL33568.1| interferon regulatory ( 245) 234 59.6 4.4e-07 gi|37903728|gb|AAP49221.1| truncated interferon re ( 298) 234 59.7 5.1e-07 gi|74152045|dbj|BAE32057.1| unnamed protein produc ( 304) 234 59.7 5.2e-07 gi|124901|sp|P15314|IRF1_MOUSE Interferon regulato ( 329) 234 59.7 5.5e-07 gi|71059797|emb|CAJ18442.1| Irf1 [Mus musculus] ( 329) 234 59.7 5.5e-07 gi|56206259|emb|CAI25045.1| interferon regulatory ( 182) 230 58.6 6.5e-07 gi|159572176|emb|CAP19289.1| interferon regulatory ( 199) 230 58.6 6.9e-07 gi|149052581|gb|EDM04398.1| interferon regulatory ( 244) 231 58.9 6.9e-07 gi|49903140|gb|AAH76382.1| Interferon regulatory f ( 328) 231 59.0 8.7e-07 gi|124902|sp|P23570|IRF1_RAT Interferon regulatory ( 328) 231 59.0 8.7e-07 gi|149052583|gb|EDM04400.1| interferon regulatory ( 357) 231 59.1 9.3e-07 gi|67972036|dbj|BAE02360.1| unnamed protein produc ( 144) 181 47.8 0.00091 gi|126290269|ref|XP_001371816.1| PREDICTED: simila ( 365) 174 46.6 0.0054 gi|23663989|gb|AAN39136.1|AF410807_1 interferon re ( 35) 160 42.7 0.0075 >>gi|62088828|dbj|BAD92861.1| interferon regulatory fact (229 aa) initn: 1589 init1: 1589 opt: 1589 Z-score: 1885.0 bits: 356.0 E(): 2.4e-96 Smith-Waterman score: 1589; 100.000% identity (100.000% similar) in 229 aa overlap (1-229:1-229) 10 20 30 40 50 60 sh0238 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHLWARVSSGRNAKVGLGLSCFLPRQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHLWARVSSGRNAKVGLGLSCFLPRQS 10 20 30 40 50 60 70 80 90 100 110 120 sh0238 CGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALTPGELVQVWQETPQVSGMTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 CGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALTPGELVQVWQETPQVSGMTL 70 80 90 100 110 120 130 140 150 160 170 180 sh0238 SLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLTCGFCCSPALSPCAVSSTLPDWHIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLTCGFCCSPALSPCAVSSTLPDWHIP 130 140 150 160 170 180 190 200 210 220 sh0238 VEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLDCLGPVKGFLREKR ::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLDCLGPVKGFLREKR 190 200 210 220 >>gi|194385000|dbj|BAG60912.1| unnamed protein product [ (112 aa) initn: 309 init1: 309 opt: 316 Z-score: 383.9 bits: 77.3 E(): 9.7e-13 Smith-Waterman score: 326; 58.036% identity (62.500% similar) in 112 aa overlap (7-116:38-111) 10 20 30 sh0238 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHL ::::::::::::::::: gi|194 EEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRK------------- 10 20 30 40 50 40 50 60 70 80 90 sh0238 WARVSSGRNAKVGLGLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV ::::::::::::::::::::::::::::::::::::: gi|194 -----------------------SCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV 60 70 80 90 100 110 120 130 140 150 sh0238 EQALTPGELVQVW--QETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTT ::::::: ..: :.: .:. gi|194 EQALTPG--YKLWHLQKTRKVND 100 110 >>gi|58737031|dbj|BAD89424.1| interferon regulatory fact (250 aa) initn: 380 init1: 301 opt: 301 Z-score: 361.4 bits: 74.3 E(): 1.7e-11 Smith-Waterman score: 460; 51.010% identity (51.010% similar) in 198 aa overlap (7-204:122-222) 10 20 30 sh0238 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHL ::::::::::::::::: gi|587 EEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRK------------- 100 110 120 130 40 50 60 70 80 90 sh0238 WARVSSGRNAKVGLGLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV ::::::::::::::::::::::::::::::::::::: gi|587 -----------------------SCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV 140 150 160 170 100 110 120 130 140 150 sh0238 EQALTPGELVQVWQETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLT :::::: gi|587 EQALTP------------------------------------------------------ 180 160 170 180 190 200 210 sh0238 CGFCCSPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLD ::::::::::::::::::::::::::::::::::::::::: gi|587 -------ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLP 190 200 210 220 230 220 sh0238 CLGPVKGFLREKR gi|587 EDIMKVKPLPTWALLK 240 250 >>gi|20178295|sp|P10914|IRF1_HUMAN Interferon regulatory (325 aa) initn: 380 init1: 301 opt: 301 Z-score: 359.9 bits: 74.4 E(): 2.1e-11 Smith-Waterman score: 460; 51.010% identity (51.010% similar) in 198 aa overlap (7-204:122-222) 10 20 30 sh0238 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHL ::::::::::::::::: gi|201 EEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRK------------- 100 110 120 130 40 50 60 70 80 90 sh0238 WARVSSGRNAKVGLGLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV ::::::::::::::::::::::::::::::::::::: gi|201 -----------------------SCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV 140 150 160 170 100 110 120 130 140 150 sh0238 EQALTPGELVQVWQETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLT :::::: gi|201 EQALTP------------------------------------------------------ 180 160 170 180 190 200 210 sh0238 CGFCCSPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLD ::::::::::::::::::::::::::::::::::::::::: gi|201 -------ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLP 190 200 210 220 230 220 sh0238 CLGPVKGFLREKR gi|201 EDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRV 240 250 260 270 280 290 >>gi|54696374|gb|AAV38559.1| interferon regulatory facto (326 aa) initn: 380 init1: 301 opt: 301 Z-score: 359.8 bits: 74.4 E(): 2.1e-11 Smith-Waterman score: 460; 51.010% identity (51.010% similar) in 198 aa overlap (7-204:122-222) 10 20 30 sh0238 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHL ::::::::::::::::: gi|546 EEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRK------------- 100 110 120 130 40 50 60 70 80 90 sh0238 WARVSSGRNAKVGLGLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV ::::::::::::::::::::::::::::::::::::: gi|546 -----------------------SCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV 140 150 160 170 100 110 120 130 140 150 sh0238 EQALTPGELVQVWQETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLT :::::: gi|546 EQALTP------------------------------------------------------ 180 160 170 180 190 200 210 sh0238 CGFCCSPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLD ::::::::::::::::::::::::::::::::::::::::: gi|546 -------ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLP 190 200 210 220 230 220 sh0238 CLGPVKGFLREKR gi|546 EDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRV 240 250 260 270 280 290 >>gi|57232584|gb|AAW47937.1| IRF-1 [Tupaia belangeri] (105 aa) initn: 384 init1: 292 opt: 292 Z-score: 355.9 bits: 72.0 E(): 3.5e-11 Smith-Waterman score: 294; 48.120% identity (51.880% similar) in 133 aa overlap (73-204:1-72) 50 60 70 80 90 100 sh0238 GRNAKVGLGLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYM-QDLEVEQALT ::::::::::::::. ::. :.:::.::: gi|572 LSSSTLPDDHSSYTAQGYIGPDMEVESALT 10 20 30 110 120 130 140 150 160 sh0238 PGELVQVWQETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLTCGFCC : gi|572 P----------------------------------------------------------- 170 180 190 200 210 220 sh0238 SPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLDCLGPV :::::::::::::::::::.::::::::::::::::::::: gi|572 --ALSPCAVSSTLPDWHIPVEIVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLPEDIMK 40 50 60 70 80 sh0238 KGFLREKR gi|572 LLEQSEWQPTNVDGKG 90 100 >>gi|109078544|ref|XP_001104048.1| PREDICTED: interferon (250 aa) initn: 380 init1: 293 opt: 293 Z-score: 352.0 bits: 72.5 E(): 5.8e-11 Smith-Waterman score: 449; 50.000% identity (51.010% similar) in 198 aa overlap (7-204:122-222) 10 20 30 sh0238 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHL ::::::::::::::::: gi|109 EEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRK------------- 100 110 120 130 40 50 60 70 80 90 sh0238 WARVSSGRNAKVGLGLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV :::::::::::::::::::::::::::.::::::::: gi|109 -----------------------SCGDSSPDTFSDGLSSSTLPDDHSSYTAPGYMQDLEV 140 150 160 170 100 110 120 130 140 150 sh0238 EQALTPGELVQVWQETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLT :.:::: gi|109 ERALTP------------------------------------------------------ 180 160 170 180 190 200 210 sh0238 CGFCCSPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLD ::::::::::::::::::::::::::::::::::::::::: gi|109 -------ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLP 190 200 210 220 230 220 sh0238 CLGPVKGFLREKR gi|109 EDIMKVKPLPTWALLK 240 250 >>gi|114601726|ref|XP_001150404.1| PREDICTED: similar to (404 aa) initn: 380 init1: 295 opt: 295 Z-score: 351.5 bits: 73.1 E(): 6.2e-11 Smith-Waterman score: 454; 50.505% identity (51.010% similar) in 198 aa overlap (7-204:201-301) 10 20 30 sh0238 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHL ::::::::::::::::: gi|114 EEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRK------------- 180 190 200 210 40 50 60 70 80 90 sh0238 WARVSSGRNAKVGLGLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV ::::::::::::::::::::::::::::::::::::: gi|114 -----------------------SCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV 220 230 240 250 100 110 120 130 140 150 sh0238 EQALTPGELVQVWQETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLT :.:::: gi|114 ERALTP------------------------------------------------------ 260 160 170 180 190 200 210 sh0238 CGFCCSPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLD ::::::::::::::::::::::::::::::::::::::::: gi|114 -------ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLP 270 280 290 300 310 220 sh0238 CLGPVKGFLREKR gi|114 EDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRV 320 330 340 350 360 370 >>gi|109078540|ref|XP_001104217.1| PREDICTED: interferon (325 aa) initn: 380 init1: 293 opt: 293 Z-score: 350.4 bits: 72.6 E(): 7.1e-11 Smith-Waterman score: 449; 50.000% identity (51.010% similar) in 198 aa overlap (7-204:122-222) 10 20 30 sh0238 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHL ::::::::::::::::: gi|109 EEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRK------------- 100 110 120 130 40 50 60 70 80 90 sh0238 WARVSSGRNAKVGLGLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV :::::::::::::::::::::::::::.::::::::: gi|109 -----------------------SCGDSSPDTFSDGLSSSTLPDDHSSYTAPGYMQDLEV 140 150 160 170 100 110 120 130 140 150 sh0238 EQALTPGELVQVWQETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLT :.:::: gi|109 ERALTP------------------------------------------------------ 180 160 170 180 190 200 210 sh0238 CGFCCSPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLD ::::::::::::::::::::::::::::::::::::::::: gi|109 -------ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLP 190 200 210 220 230 220 sh0238 CLGPVKGFLREKR gi|109 EDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRV 240 250 260 270 280 290 >>gi|159461523|gb|ABW96798.1| interferon regulatory fact (326 aa) initn: 380 init1: 293 opt: 293 Z-score: 350.4 bits: 72.6 E(): 7.1e-11 Smith-Waterman score: 449; 50.000% identity (51.010% similar) in 198 aa overlap (7-204:122-222) 10 20 30 sh0238 QPVCPTERKSKSSRDAKSKAKRKVSVVLSSQAFGHL ::::::::::::::::: gi|159 EEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRK------------- 100 110 120 130 40 50 60 70 80 90 sh0238 WARVSSGRNAKVGLGLSCFLPRQSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEV :::::::::::::::::::::::::::.::::::::: gi|159 -----------------------SCGDSSPDTFSDGLSSSTLPDDHSSYTAPGYMQDLEV 140 150 160 170 100 110 120 130 140 150 sh0238 EQALTPGELVQVWQETPQVSGMTLSLGGMVLAHGGPLVQAAGLVGGRSMSCKLRKHTTLT :.:::: gi|159 ERALTP------------------------------------------------------ 180 160 170 180 190 200 210 sh0238 CGFCCSPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEGWCSWGLACLLD ::::::::::::::::::::::::::::::::::::::::: gi|159 -------ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEAATDEDEEGKLP 190 200 210 220 230 220 sh0238 CLGPVKGFLREKR gi|159 EDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRV 240 250 260 270 280 290 229 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 16:34:45 2008 done: Wed Aug 13 16:37:31 2008 Total Scan time: 677.580 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]