hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-16434321/chunk_1/iprscan-20080813-16434321.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sh02642 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00041.11.ls Fibronectin type III domain 375.5 7.8e-110 5 PF00041.11.fs Fibronectin type III domain 365.4 8.2e-107 5 PF07679.6.ls Immunoglobulin I-set domain 183.8 3.9e-52 3 PF07679.6.fs Immunoglobulin I-set domain 179.7 8.5e-52 5 PF00047.15.fs Immunoglobulin domain 84.7 1.8e-22 6 PF00047.15.ls Immunoglobulin domain 77.4 4.2e-20 5 PF07686.7.fs Immunoglobulin V-set domain 31.9 1.6e-08 2 PF07686.7.ls Immunoglobulin V-set domain 31.0 3.8e-06 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/3 175 267 .. 1 96 [] 59.7 8.8e-15 PF07679.6.fs 1/5 175 267 .. 1 96 [] 57.8 3.1e-16 PF07679.6.ls 2/3 299 393 .. 1 96 [] 30.1 3.3e-06 PF00047.15.fs 2/6 313 375 .. 1 62 [. 18.4 0.00028 PF00047.15.ls 2/5 313 378 .. 1 65 [] 15.9 0.14 PF07679.6.fs 3/5 332 393 .. 29 96 .] 27.5 2e-07 PF00041.11.fs 1/5 404 490 .. 1 84 [] 74.2 1.1e-20 PF00041.11.ls 1/5 404 490 .. 1 84 [] 76.2 9.3e-20 PF00041.11.ls 2/5 532 618 .. 1 84 [] 77.0 5.5e-20 PF00041.11.fs 2/5 532 618 .. 1 84 [] 75.0 6.8e-21 PF00041.11.fs 3/5 633 717 .. 1 84 [] 72.2 4.2e-20 PF00041.11.ls 3/5 633 717 .. 1 84 [] 74.2 3.8e-19 PF00041.11.fs 4/5 732 818 .. 1 84 [] 63.8 1.1e-17 PF00041.11.ls 4/5 732 818 .. 1 84 [] 65.8 1.3e-16 PF00041.11.fs 5/5 834 920 .. 1 84 [] 80.2 2.2e-22 PF00041.11.ls 5/5 834 920 .. 1 84 [] 82.2 1.5e-21 PF07686.7.fs 2/2 1365 1455 .. 1 141 [] 22.3 8.1e-06 PF07686.7.ls 2/2 1365 1455 .. 1 141 [] 23.9 0.00019 PF07679.6.ls 3/3 1366 1456 .. 1 96 [] 94.0 4.2e-25 PF07679.6.fs 5/5 1372 1456 .. 7 96 .] 92.0 3.2e-26 PF00047.15.ls 5/5 1380 1441 .. 1 65 [] 41.4 2.9e-09 PF00047.15.fs 6/6 1380 1438 .. 1 62 [. 44.5 1.8e-11 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 3, from 175 to 267: score 59.7, E = 8.8e-15 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+++ ++++ +V e s+++ +V+G+P P V+W+KdG+ + + + sh02642 175 PEILVRLRSHTVWERMSVKLCFTVQGFPMPVVQWYKDGSLICQ-AAE 220 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +++++ + g +tL+I++++ dD +Y+ vAtN G++++ a + V sh02642 221 PGKYRIESNY--GVHTLEINRADFDDTATYSAVATNAHGQVSTNAAVVV 267 -* sh02642 - - PF07679.6.fs: domain 1 of 5, from 175 to 267: score 57.8, E = 3.1e-16 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+++ ++++ +V e s+++ +V+G+P P V+W+KdG+ + + + sh02642 175 PEILVRLRSHTVWERMSVKLCFTVQGFPMPVVQWYKDGSLICQ-AAE 220 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +++++ + g +tL+I++++ dD +Y+ vAtN G++++ a + V sh02642 221 PGKYRIESNY--GVHTLEINRADFDDTATYSAVATNAHGQVSTNAAVVV 267 -* sh02642 - - PF07679.6.ls: domain 2 of 3, from 299 to 393: score 30.1, E = 3.3e-06 *->PkFtqkpkdveVqeGesarfeCkVtGtPe.....PtVsWfKdGqpls +F+ k +eGe++++ C+ tP+ ++ +P +W++d+ l+ sh02642 299 VQFLEKFGVTFRREGETVTLKCTMLVTPDlkrvqPRAEWYRDDVLLK 345 svllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasa + s+ k+ + + g ++L +s +dD+G+Yt + ++G + sa sh02642 346 E----SKWTKMFFGE--GQASLSFSHLHKDDEGLYTLRIVSRGGVSDHSA 389 eLtV<-* +L V sh02642 390 FLFV 393 PF00047.15.fs: domain 2 of 6, from 313 to 375: score 18.4, E = 0.00028 *->GesvtLtCsvs...gfgppdvtvtWlrngk.lt.gvlvtssenngds Ge+vtL C+ +++ ++++ W+r++ l ++ ++ + +g+ sh02642 313 GETVTLKCTMLvtpDLKRVQPRAEWYRDDVlLKeSKWTKMFFGEGQA 359 tyqtsLtitnvtpeDggtYt<-* + L+++ + ++D+g Yt sh02642 360 S----LSFSHLHKDDEGLYT 375 PF00047.15.ls: domain 2 of 5, from 313 to 378: score 15.9, E = 0.14 *->GesvtLtCsvs...gfgppdvtvtWlrngk.lt.gvlvtssenngds Ge+vtL C+ +++ ++++ W+r++ l ++ ++ + +g+ sh02642 313 GETVTLKCTMLvtpDLKRVQPRAEWYRDDVlLKeSKWTKMFFGEGQA 359 tyqtsLtitnvtpeDggtYtCvv<-* + L+++ + ++D+g Yt + sh02642 360 S----LSFSHLHKDDEGLYTLRI 378 PF07679.6.fs: domain 3 of 5, from 332 to 393: score 27.5, E = 2e-07 *->ePtVsWfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqpdDsG +P +W++d+ l++ s+ k+ + + g ++L +s +dD+G sh02642 332 QPRAEWYRDDVLLKE----SKWTKMFFGE--GQASLSFSHLHKDDEG 372 kYtCvAtNsaGeaeasaeLtV<-* +Yt + ++G + sa+L V sh02642 373 LYTLRIVSRGGVSDHSAFLFV 393 PF00041.11.fs: domain 1 of 5, from 404 to 490: score 74.2, E = 1.1e-20 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P+aP +l++ d + +++ ++W+pP ++ +p+ gY v+ ++++++ sh02642 404 PGAPMDLQCHDANRDYVIVTWKPPNttTESPVMGYFVDR-CEVGTNN 449 wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* w++ + +++ y +tgL +g+ Y +rV+Avn +G +++S sh02642 450 WVQCNDAPVKIcKYPVTGLFEGRSYIFRVRAVNSAGiSRPS 490 PF00041.11.ls: domain 1 of 5, from 404 to 490: score 76.2, E = 9.3e-20 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P+aP +l++ d + +++ ++W+pP ++ +p+ gY v+ ++++++ sh02642 404 PGAPMDLQCHDANRDYVIVTWKPPNttTESPVMGYFVDR-CEVGTNN 449 wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* w++ + +++ y +tgL +g+ Y +rV+Avn +G +++S sh02642 450 WVQCNDAPVKIcKYPVTGLFEGRSYIFRVRAVNSAGiSRPS 490 PF00041.11.ls: domain 2 of 5, from 532 to 618: score 77.0, E = 5.5e-20 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew P++Pt++++++++ ++++lsW+pPt+++ + Y ++ + +++g+w sh02642 532 PGPPTGVHASEISRNYVVLSWEPPTpRGKDPLMYFIEK-SVVGSGSW 577 kelt...vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++++ ++ ++ +y + +L +g Y++rV + n++G +++S sh02642 578 QRVNaqtAVRSP-RYAVFDLMEGKSYVFRVLSANRHGlSEPS 618 PF00041.11.fs: domain 2 of 5, from 532 to 618: score 75.0, E = 6.8e-21 *->PsaPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpknggew P++Pt++++++++ ++++lsW+pPt+++ + Y ++ + +++g+w sh02642 532 PGPPTGVHASEISRNYVVLSWEPPTpRGKDPLMYFIEK-SVVGSGSW 577 kelt...vpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++++ ++ ++ +y + +L +g Y++rV + n++G +++S sh02642 578 QRVNaqtAVRSP-RYAVFDLMEGKSYVFRVLSANRHGlSEPS 618 PF00041.11.fs: domain 3 of 5, from 633 to 717: score 72.2, E = 4.2e-20 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. PsaP+++ ++ +t ts++++W++P+ ++ gY v++ + ++++ + sh02642 633 PSAPGRVLASRNTKTSVVVQWDRPKHEEDLLGYYVDC-CVAGTNLwe 678 .wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +++++ + + ++++gL+ g +Y +rV+Avn++G ++ S sh02642 679 pCNHKPIGYNR--FVVHGLTTGEQYIFRVKAVNAVGmSENS 717 PF00041.11.ls: domain 3 of 5, from 633 to 717: score 74.2, E = 3.8e-19 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. PsaP+++ ++ +t ts++++W++P+ ++ gY v++ + ++++ + sh02642 633 PSAPGRVLASRNTKTSVVVQWDRPKHEEDLLGYYVDC-CVAGTNLwe 678 .wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* +++++ + + ++++gL+ g +Y +rV+Avn++G ++ S sh02642 679 pCNHKPIGYNR--FVVHGLTTGEQYIFRVKAVNAVGmSENS 717 PF00041.11.fs: domain 4 of 5, from 732 to 818: score 63.8, E = 1.1e-17 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps P ++t + s+tl W+ P+ +g++pi gY ++ R ++ + sh02642 732 PSHPYGITLLNCDGHSMTLGWKVPKfsGGSPILGYYLDKR-EVHHKN 777 wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* w+e++ ++++ + t+ gL +g+ Y+++++Avn +G G++S sh02642 778 WHEVNSSPSKPtILTVDGLMEGSLYEFKIAAVNLAGiGEPS 818 PF00041.11.ls: domain 4 of 5, from 732 to 818: score 65.8, E = 1.3e-16 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge Ps P ++t + s+tl W+ P+ +g++pi gY ++ R ++ + sh02642 732 PSHPYGITLLNCDGHSMTLGWKVPKfsGGSPILGYYLDKR-EVHHKN 777 wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* w+e++ ++++ + t+ gL +g+ Y+++++Avn +G G++S sh02642 778 WHEVNSSPSKPtILTVDGLMEGSLYEFKIAAVNLAGiGEPS 818 PF00041.11.fs: domain 5 of 5, from 834 to 920: score 80.2, E = 2.2e-22 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P++ +lt+ +v++tsl+ W++P +g++p++gY v+ R +++ ge sh02642 834 PGPAYDLTFCEVRDTSLVMLWKAPVysGSSPVSGYFVDFR-EEDAGE 879 wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* w +++ + t+++ +++L+ g +Y++rV+Avn++G G++S sh02642 880 WITVNQTTTASrYLKVSDLQQGKTYVFRVRAVNANGvGKPS 920 PF00041.11.ls: domain 5 of 5, from 834 to 920: score 82.2, E = 1.5e-21 *->PsaPtnltvtdvtstsltlsWspPt..gngpitgYevtyRqpkngge P++ +lt+ +v++tsl+ W++P +g++p++gY v+ R +++ ge sh02642 834 PGPAYDLTFCEVRDTSLVMLWKAPVysGSSPVSGYFVDFR-EEDAGE 879 wkeltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* w +++ + t+++ +++L+ g +Y++rV+Avn++G G++S sh02642 880 WITVNQTTTASrYLKVSDLQQGKTYVFRVRAVNANGvGKPS 920 PF07686.7.fs: domain 2 of 2, from 1365 to 1455: score 22.3, E = 8.1e-06 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + + p +vt eG+++ L+Ct+ +++ sh02642 1365 GRLIGG-LPD------------VVTIMEGKTLNLTCTVF---GNP-- 1393 ssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtl ++ ++ W++++q+ + +e f+ +v+ sh02642 1394 --DP-EVIWFKNdQDI----------------------QLSEHFSVKVE- 1417 sgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* + + +s+tI+ ++++DsG Y ++n + g+ + +tV+ sh02642 1418 ----QAKYVSMTIKGVTSEDSGKYSINIKN---KYGGEKIDVTVS 1455 PF07686.7.ls: domain 2 of 2, from 1365 to 1455: score 23.9, E = 0.00019 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss + + p +vt eG+++ L+Ct+ +++ sh02642 1365 GRLIGG-LPD------------VVTIMEGKTLNLTCTVF---GNP-- 1393 ssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfkgrvtl ++ ++ W++++q+ + +e f+ +v+ sh02642 1394 --DP-EVIWFKNdQDI----------------------QLSEHFSVKVE- 1417 sgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* + + +s+tI+ ++++DsG Y ++n + g+ + +tV+ sh02642 1418 ----QAKYVSMTIKGVTSEDSGKYSINIKN---KYGGEKIDVTVS 1455 PF07679.6.ls: domain 3 of 3, from 1366 to 1456: score 94.0, E = 4.2e-25 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp + p v+++eG++++++C+V G+P+P+V WfK++q+++ sh02642 1366 RLIGGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIQL---- 1408 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< s++f+v+++ + + tI++v+++DsGkY++ +N++G + ++++ V sh02642 1409 SEHFSVKVEQ-AKYVSMTIKGVTSEDSGKYSINIKNKYGGEKIDVTVSV 1456 -* sh02642 - - PF07679.6.fs: domain 5 of 5, from 1372 to 1456: score 92.0, E = 3.2e-26 *->pkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkv p v+++eG++++++C+V G+P+P+V WfK++q+++ s++f+v sh02642 1372 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIQL----SEHFSV 1414 tydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* +++ + + tI++v+++DsGkY++ +N++G + ++++ V sh02642 1415 KVEQ-AKYVSMTIKGVTSEDSGKYSINIKNKYGGEKIDVTVSV 1456 PF00047.15.ls: domain 5 of 5, from 1380 to 1441: score 41.4, E = 2.9e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++++LtC+v fg+pd++v W++n+++++ +++ + +++ + ++ sh02642 1380 GKTLNLTCTV--FGNPDPEVIWFKNDQdIQlSEHFSVKVEQAKYVS- 1423 tsLtitnvtpeDggtYtCvv<-* ti+ vt+eD+g Y+ sh02642 1424 --MTIKGVTSEDSGKYSINI 1441 PF00047.15.fs: domain 6 of 6, from 1380 to 1438: score 44.5, E = 1.8e-11 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G++++LtC+v fg+pd++v W++n+++++ +++ + +++ + ++ sh02642 1380 GKTLNLTCTV--FGNPDPEVIWFKNDQdIQlSEHFSVKVEQAKYVS- 1423 tsLtitnvtpeDggtYt<-* ti+ vt+eD+g Y+ sh02642 1424 --MTIKGVTSEDSGKYS 1438 //