hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-16434321/chunk_1/iprscan-20080813-16434321.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sh02642 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00060 280.1 1.7e-79 5 SM00409 112.1 6.2e-29 5 SM00408 67.8 1.3e-15 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/5 181 268 .. 1 58 [] 30.4 0.00025 SM00408 1/3 191 257 .. 1 56 [] 14.1 0.19 SM00409 2/5 305 394 .. 1 58 [] 26.1 0.0049 SM00408 2/3 311 383 .. 1 56 [] 14.0 0.19 SM00060 1/5 404 487 .. 1 69 [] 60.9 1.7e-13 SM00060 2/5 532 615 .. 1 69 [] 56.0 4.7e-12 SM00060 3/5 633 714 .. 1 69 [] 59.3 4.9e-13 SM00060 4/5 732 815 .. 1 69 [] 52.2 6.7e-11 SM00060 5/5 834 917 .. 1 69 [] 51.7 9.7e-11 SM00409 3/5 934 1020 .. 1 58 [] 1.3 1.5e+02 SM00409 4/5 1156 1236 .. 1 58 [] 5.5 49 SM00409 5/5 1372 1457 .. 1 58 [] 48.9 6.9e-10 SM00408 3/3 1378 1446 .. 1 56 [] 39.6 4.1e-07 Alignments of top-scoring domains: SM00409: domain 1 of 5, from 181 to 268: score 30.4, E = 0.00025 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++tv e sv+L ++++ + + ++Wy++++ + +++ + sh02642 181 LRsHTVWERMSVKLCFtVQgfpmpVVQWYkdgslicqaaepgkyrie 227 .......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++ + ++L+I+++ ++D+ +tY +at+ +g++s ++ + V+ sh02642 228 snygvhtLEInRADFDDT---ATYSAVATnaHGQVST--NAAVVVR 268 SM00408: domain 1 of 3, from 191 to 257: score 14.1, E = 0.19 *->leGqsVtLtCp.asgdpvpnItWlk.gkplp..............sg sV L C+++ g+p p ++W+k+g+ + + ++++ + +++ + sh02642 191 ----SVKL-CFtVQGFPMPVVQWYKdGSLICqaaepgkyriesnyGV 232 stLtiknvsleDsGlYtCvArNsvg<-* tL+i ++ ++D +Y+ vA+N++g sh02642 233 HTLEINRADFDDTATYSAVATNAHG 257 SM00409: domain 2 of 5, from 305 to 394: score 26.1, E = 0.0049 *->pp.vtvkeGesvtLtC.as..........titWy............. + + +eGe+vtL+C+ +++ + ++ Wy+++ + ++ ++ sh02642 305 FGvTFRREGETVTLKCtMLvtpdlkrvqpRAEWYrddvllkeskwtk 351 .........LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* + ++ +L ++++ ++D+ G Yt + + g +s +++ L V+ sh02642 352 mffgegqasLSFsHLHKDDE---GLYTLRIVsRGGVSD-HSAFLFVR 394 SM00408: domain 2 of 3, from 311 to 383: score 14.0, E = 0.19 *->leGqsVtLtCpasgdpvpnIt.......Wlk.gkplp.......... +eG++VtL+C +p+ ++ +++ +W++++ l +++ ++ + sh02642 311 REGETVTLKCT--MLVTPDLKrvqpraeWYRdDVLLKeskwtkmffg 355 .sgstLtiknvsleDsGlYtCvArNsvg<-* ++ +L++++ ++D+GlYt + ++ g sh02642 356 eGQASLSFSHLHKDDEGLYTLRIVSRGG 383 SM00060: domain 1 of 5, from 404 to 487: score 60.9, E = 1.7e-13 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. Pg+P + l+ +d +++ v ++W+pP+ ++++ gY ++ sh02642 404 PGAPMD---LQCHDANRD------YVIVTWKPPntttespVMGYFvd 441 .....................ytltgLkPgaepwteYefrVrAvngndaG + +++++++++ ++ +++ +y +tgL +g Y frVrAvn+ aG sh02642 442 rcevgtnnwvqcndapvkickYPVTGLFEG----RSYIFRVRAVNS--AG 485 eg<-* ++ sh02642 486 IS 487 SM00060: domain 2 of 5, from 532 to 615: score 56.0, E = 4.7e-12 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. PgpP++ +++++++++ v+lsWepP + ++++ +++++ sh02642 532 PGPPTG---VHASEISRN------YVVLSWEPPtprgkdpLMYFIek 569 .....................ytltgLkPgaepwteYefrVrAvngndaG ++++++++++++ ++ +++++y + +L +g + Y+frV n+ +G sh02642 570 svvgsgswqrvnaqtavrsprYAVFDLMEG----KSYVFRVLSANR--HG 613 eg<-* + sh02642 614 LS 615 SM00060: domain 3 of 5, from 633 to 714: score 59.3, E = 4.9e-13 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr.... P++P++ + ++ t+t sv+++W++P+++++ +gY ++ sh02642 633 PSAPGR---VLASRNTKT------SVVVQWDRPkheedLLGYYvdcc 670 ...................ytltgLkPgaepwteYefrVrAvngndaGeg + +++ +++ + ++ + ++++++gL+ g +Y frV+Avn+ +G + sh02642 671 vagtnlwepcnhkpigynrFVVHGLTTG----EQYIFRVKAVNA--VGMS 714 <-* sh02642 - - SM00060: domain 4 of 5, from 732 to 815: score 52.2, E = 6.7e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. P+ P + +++ + + + s+tl W+ P+ +++++i+gY + sh02642 732 PSHPYG---ITLLNCDGH------SMTLGWKVPkfsggspILGYYld 769 .....................ytltgLkPgaepwteYefrVrAvngndaG ++++ +++ ++++++++++ t++gL +g + Yef+++Avn aG sh02642 770 krevhhknwhevnsspskptiLTVDGLMEG----SLYEFKIAAVNL--AG 813 eg<-* +g sh02642 814 IG 815 SM00060: domain 5 of 5, from 834 to 917: score 51.7, E = 9.7e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.......ivgYr.. Pgp + l++ +v +t s++ W++P +++++++ gY ++ sh02642 834 PGPAYD---LTFCEVRDT------SLVMLWKAPvysgsspVSGYFvd 871 .....................ytltgLkPgaepwteYefrVrAvngndaG ++++ +++ +++++++ ++ ++++L+ g ++Y+frVrAvn+ +G sh02642 872 freedagewitvnqtttasryLKVSDLQQG----KTYVFRVRAVNA--NG 915 eg<-* g sh02642 916 VG 917 SM00409: domain 3 of 5, from 934 to 1020: score 1.3, E = 1.5e+02 *->pp.vtvkeGesvtLtC.as........titWy............... +++++ + e ++ ++ ++ +++tW ++ +++ + + sh02642 934 TKeISAGVDEQGNIYLgFDcqemtdasQFTWCksyeeisdderfkie 980 .......LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-* + +++++L ++n +eD GtY +++ +ss ++ L + sh02642 981 tvgdhskLYLkNPDKEDL---GTYSVSVSdTDGVSS--SFVLDPE 1020 SM00409: domain 4 of 5, from 1156 to 1236: score 5.5, E = 49 *->pp.vtvkeGesvtLtC.as......titWy................. + v e v+L C+++++++ + ++W++++ + + ++ ++ sh02642 1156 YLhWDVTEECEVRLVCkVAntkketVFKWLkddalyetetlpnlerg 1202 ...LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* L I+++++ D G+Y + + ++ + q + + sh02642 1203 iceLLIpKLSKKDH---GEYKATLK--DDRG-QDVSILEI 1236 SM00409: domain 5 of 5, from 1372 to 1457: score 48.9, E = 6.9e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. p vt +eG +++LtC++ +++++++ W++++++ + + + + + + sh02642 1372 PDvVTIMEGKTLNLTCtVFgnpdpEVIWFkndqdiqlsehfsvkveq 1418 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + ++tI++vt eDs G Y ++++g + +t++V+ sh02642 1419 akyvsMTIkGVTSEDS---GKYSINIKnkYGGEKI--DVTVSVY 1457 SM00408: domain 3 of 3, from 1378 to 1446: score 39.6, E = 4.1e-07 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL eG ++ LtC + g+p+p++ W+k+++ ++ +++ + + ++ + + sh02642 1378 MEGKTLNLTCTVFGNPDPEVIWFKnDQDIQlsehfsvkveqaKYVSM 1424 tiknvsleDsGlYtCvArNsvg<-* tik v+ eDsG+Y+ N+ g sh02642 1425 TIKGVTSEDSGKYSINIKNKYG 1446 //