hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-16505721/chunk_1/iprscan-20080813-16505721.nocrc
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Query sequence: sh02837
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF01778.7.fs   Ribosomal L28e protein family            147.4    2.9e-42   1
PF01778.7.ls   Ribosomal L28e protein family             84.2    3.6e-22   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF01778.7.fs     1/1      10    77 ..     1    73 [.   147.4  2.9e-42
PF01778.7.ls     1/1      10    94 ..     1   137 []    84.2  3.6e-22

Alignments of top-scoring domains:
PF01778.7.fs: domain 1 of 1, from 10 to 77: score 147.4, E = 2.9e-42
                   *->StdLiWqvVRnNskFLvKrngigksKvqFStEpfNlkavnskrysGL
                      S++L+W+vVRn+s+FL+Krn+++     +StEp+Nlka+ns+ry+GL
     sh02837    10    SAHLQWMVVRNCSSFLIKRNKQT-----YSTEPNNLKARNSFRYNGL 51   

                   aNkKAvgVqaaadrkaVvVttkneKg<-*
                   +++K+vgV++aad+k+VvV++k+++g   
     sh02837    52 IHRKTVGVEPAADGKGVVVVIKRRSG    77   

PF01778.7.ls: domain 1 of 1, from 10 to 94: score 84.2, E = 3.6e-22
                   *->StdLiWqvVRnNskFLvKrngigksKvqFStEpfNlkavnskrysGL
                      S++L+W+vVRn+s+FL+Krn+++     +StEp+Nlka+ns+ry+GL
     sh02837    10    SAHLQWMVVRNCSSFLIKRNKQT-----YSTEPNNLKARNSFRYNGL 51   

                   aNkKAvgVqaaadrkaVvVttkneKgqnKPaksykkDsilnkevrasvks
                   +++K+vgV++aad+k+VvV++k+++g       +                
     sh02837    52 IHRKTVGVEPAADGKGVVVVIKRRSG------EFCL-------------- 81   

                   iAkaivrnkYRpDLkkaAlrRASAIlrsqvKKAKVkktka<-*
                     + ++   +                 s+        +     
     sh02837    82 --VWARERPL-----------------SR--------VWE    94   

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