# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osh02837.fasta.nr -Q sh02837.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sh02837, 95 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842884 sequences Expectation_n fit: rho(ln(x))= 4.2167+/-0.000176; mu= 7.9678+/- 0.010 mean_var=49.5104+/- 9.616, 0's: 41 Z-trim: 44 B-trim: 0 in 0/68 Lambda= 0.182275 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088834|dbj|BAD92864.1| ribosomal protein L28 ( 95) 634 173.5 3.5e-42 gi|119592781|gb|EAW72375.1| ribosomal protein L28, ( 87) 590 161.9 1e-38 gi|114687636|ref|XP_520919.2| PREDICTED: similar t ( 154) 496 137.4 4.3e-31 gi|73947458|ref|XP_533581.2| PREDICTED: similar to ( 259) 481 133.6 9.9e-30 gi|90079751|dbj|BAE89555.1| unnamed protein produc ( 137) 457 127.1 4.8e-28 gi|14603467|gb|AAH10182.1| Ribosomal protein L28 [ ( 137) 457 127.1 4.8e-28 gi|109113967|ref|XP_001113291.1| PREDICTED: simila ( 137) 457 127.1 4.8e-28 gi|550019|gb|AAA85657.1| ribosomal protein L28 ( 137) 457 127.1 4.8e-28 gi|22002069|sp|P46779|RL28_HUMAN 60S ribosomal pro ( 137) 457 127.1 4.8e-28 gi|61372494|gb|AAX43853.1| ribosomal protein L28 [ ( 138) 457 127.1 4.8e-28 gi|194374529|dbj|BAG57160.1| unnamed protein produ ( 163) 457 127.2 5.5e-28 gi|148698365|gb|EDL30312.1| mCG120681 [Mus musculu ( 137) 454 126.3 8.3e-28 gi|730549|sp|P41105|RL28_MOUSE 60S ribosomal prote ( 137) 454 126.3 8.3e-28 gi|149254489|ref|XP_001480132.1| PREDICTED: simila ( 137) 454 126.3 8.3e-28 gi|56541228|gb|AAH86797.1| Ribosomal protein L28 [ ( 137) 454 126.3 8.3e-28 gi|108860931|sp|Q3T0L7|RL28_BOVIN 60S ribosomal pr ( 137) 454 126.3 8.3e-28 gi|149722508|ref|XP_001495815.1| PREDICTED: riboso ( 137) 454 126.3 8.3e-28 gi|119592782|gb|EAW72376.1| ribosomal protein L28, ( 69) 447 124.3 1.8e-27 gi|109500099|ref|XP_001073240.1| PREDICTED: simila ( 151) 447 124.5 3.2e-27 gi|126344753|ref|XP_001362998.1| PREDICTED: simila ( 137) 444 123.7 5.1e-27 gi|27682045|ref|XP_212890.1| PREDICTED: similar to ( 137) 432 120.6 4.6e-26 gi|132836|sp|P17702|RL28_RAT 60S ribosomal protein ( 137) 429 119.8 7.9e-26 gi|38112699|gb|AAR11386.1| 60S ribosomal protein L ( 137) 427 119.2 1.1e-25 gi|60099215|emb|CAH65438.1| hypothetical protein [ ( 138) 426 119.0 1.4e-25 gi|47209226|emb|CAF89608.1| unnamed protein produc ( 70) 415 115.9 6e-25 gi|138519961|gb|AAI35646.1| Ribosomal protein L28 ( 137) 417 116.6 7e-25 gi|51873945|gb|AAH78544.1| LOC100101273 protein [X ( 137) 417 116.6 7e-25 gi|60417174|emb|CAH57698.1| 60S ribosomal protein ( 137) 412 115.3 1.8e-24 gi|32450198|gb|AAH53798.1| MGC64430 protein [Xenop ( 137) 412 115.3 1.8e-24 gi|33416595|gb|AAH55584.1| Ribosomal protein L28-l ( 138) 412 115.3 1.8e-24 gi|164690993|dbj|BAF98679.1| ribosomal protein L28 ( 137) 409 114.5 3e-24 gi|15293925|gb|AAK95155.1|AF401583_1 ribosomal pro ( 137) 399 111.9 1.9e-23 gi|116488134|gb|ABJ98649.1| 60S ribosomal protein ( 106) 362 102.1 1.3e-20 gi|188572447|gb|ACD65130.1| putative 60S ribosomal ( 135) 351 99.2 1.2e-19 gi|159145646|gb|ABW90360.1| putative ribosomal pro ( 135) 327 92.9 9.3e-18 gi|59895928|gb|AAX11340.1| ribosomal protein L28 [ ( 135) 305 87.1 5.1e-16 gi|72112300|ref|XP_789202.1| PREDICTED: similar to ( 139) 293 84.0 4.7e-15 gi|158187788|gb|ABW23183.1| ribosomal protein rpl2 ( 137) 283 81.4 2.9e-14 gi|160552251|gb|ABX44831.1| putative 60S ribosomal ( 122) 274 79.0 1.3e-13 gi|193918733|gb|EDW17600.1| GI12761 [Drosophila mo ( 144) 259 75.1 2.4e-12 gi|70909829|emb|CAJ17401.1| ribosomal protein L28e ( 137) 258 74.8 2.7e-12 gi|194195474|gb|EDX09050.1| GD13338 [Drosophila si ( 144) 257 74.5 3.4e-12 gi|190653505|gb|EDV50748.1| GG14270 [Drosophila er ( 144) 257 74.5 3.4e-12 gi|24418652|sp|Q9VZS5|RL28_DROME 60S ribosomal pro ( 144) 257 74.5 3.4e-12 gi|38047791|gb|AAR09798.1| similar to Drosophila m ( 144) 257 74.5 3.4e-12 gi|7292336|gb|AAF47743.1| CG12740-PC, isoform C [D ( 165) 257 74.6 3.8e-12 gi|20976820|gb|AAM27485.1| GH04183p [Drosophila me ( 236) 257 74.7 5e-12 gi|194141876|gb|EDW58289.1| GJ15527 [Drosophila vi ( 144) 253 73.5 7e-12 gi|194158466|gb|EDW73367.1| GK16691 [Drosophila wi ( 134) 252 73.2 8e-12 gi|190624109|gb|EDV39633.1| GF24379 [Drosophila an ( 144) 252 73.2 8.4e-12 >>gi|62088834|dbj|BAD92864.1| ribosomal protein L28 vari (95 aa) initn: 634 init1: 634 opt: 634 Z-score: 912.4 bits: 173.5 E(): 3.5e-42 Smith-Waterman score: 634; 100.000% identity (100.000% similar) in 95 aa overlap (1-95:1-95) 10 20 30 40 50 60 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE 10 20 30 40 50 60 70 80 90 sh0283 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL ::::::::::::::::::::::::::::::::::: gi|620 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL 70 80 90 >>gi|119592781|gb|EAW72375.1| ribosomal protein L28, iso (87 aa) initn: 590 init1: 590 opt: 590 Z-score: 850.4 bits: 161.9 E(): 1e-38 Smith-Waterman score: 590; 100.000% identity (100.000% similar) in 87 aa overlap (9-95:1-87) 10 20 30 40 50 60 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE 10 20 30 40 50 70 80 90 sh0283 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL ::::::::::::::::::::::::::::::::::: gi|119 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL 60 70 80 >>gi|114687636|ref|XP_520919.2| PREDICTED: similar to ri (154 aa) initn: 496 init1: 496 opt: 496 Z-score: 713.4 bits: 137.4 E(): 4.3e-31 Smith-Waterman score: 496; 97.436% identity (100.000% similar) in 78 aa overlap (1-78:10-87) 10 20 30 40 50 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGL :::.::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MVLLFPFQVAAAKGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGL 10 20 30 40 50 60 60 70 80 90 sh0283 IHRKTVGVEPAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL ::::::::::::::::::::::::::. gi|114 IHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYR 70 80 90 100 110 120 >>gi|73947458|ref|XP_533581.2| PREDICTED: similar to rib (259 aa) initn: 477 init1: 477 opt: 481 Z-score: 689.0 bits: 133.6 E(): 9.9e-30 Smith-Waterman score: 481; 93.590% identity (98.718% similar) in 78 aa overlap (1-78:115-192) 10 20 30 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNK :. .:::::::::::::::::::::::::: gi|739 GQARAHRGSGNAFGIKGVAGSSTCLFPSLAAVRKGAAAMSAHLQWMVVRNCSSFLIKRNK 90 100 110 120 130 140 40 50 60 70 80 90 sh0283 QTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGEFCLVWARERPLS :::::::::::::::::::::::::::::::::::::::::.:::::. gi|739 QTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVLKRRSGQRKPATSYVRTTI 150 160 170 180 190 200 sh0283 RVWEL gi|739 NKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRKRARPTKSS 210 220 230 240 250 >>gi|90079751|dbj|BAE89555.1| unnamed protein product [M (137 aa) initn: 457 init1: 457 opt: 457 Z-score: 658.7 bits: 127.1 E(): 4.8e-28 Smith-Waterman score: 457; 98.571% identity (100.000% similar) in 70 aa overlap (9-78:1-70) 10 20 30 40 50 60 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE 10 20 30 40 50 70 80 90 sh0283 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL :::::::::::::::::. gi|900 PAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIR 60 70 80 90 100 110 >>gi|14603467|gb|AAH10182.1| Ribosomal protein L28 [Homo (137 aa) initn: 457 init1: 457 opt: 457 Z-score: 658.7 bits: 127.1 E(): 4.8e-28 Smith-Waterman score: 457; 98.571% identity (100.000% similar) in 70 aa overlap (9-78:1-70) 10 20 30 40 50 60 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE 10 20 30 40 50 70 80 90 sh0283 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL :::::::::::::::::. gi|146 PAADGKGVVVVIKRRSGQRKPATSYVRTTINRNARATLSSIRHMIRKNKYRPDLRMAAIR 60 70 80 90 100 110 >>gi|109113967|ref|XP_001113291.1| PREDICTED: similar to (137 aa) initn: 457 init1: 457 opt: 457 Z-score: 658.7 bits: 127.1 E(): 4.8e-28 Smith-Waterman score: 457; 98.571% identity (100.000% similar) in 70 aa overlap (9-78:1-70) 10 20 30 40 50 60 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE 10 20 30 40 50 70 80 90 sh0283 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL :::::::::::::::::. gi|109 PAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKSKYRPDLRMAAIR 60 70 80 90 100 110 >>gi|550019|gb|AAA85657.1| ribosomal protein L28 gi| (137 aa) initn: 457 init1: 457 opt: 457 Z-score: 658.7 bits: 127.1 E(): 4.8e-28 Smith-Waterman score: 457; 98.571% identity (100.000% similar) in 70 aa overlap (9-78:1-70) 10 20 30 40 50 60 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|550 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE 10 20 30 40 50 70 80 90 sh0283 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL :::::::::::::::::. gi|550 PAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIR 60 70 80 90 100 110 >>gi|22002069|sp|P46779|RL28_HUMAN 60S ribosomal protein (137 aa) initn: 457 init1: 457 opt: 457 Z-score: 658.7 bits: 127.1 E(): 4.8e-28 Smith-Waterman score: 457; 98.571% identity (100.000% similar) in 70 aa overlap (9-78:1-70) 10 20 30 40 50 60 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE 10 20 30 40 50 70 80 90 sh0283 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL :::::::::::::::::. gi|220 PAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIR 60 70 80 90 100 110 >>gi|61372494|gb|AAX43853.1| ribosomal protein L28 [synt (138 aa) initn: 457 init1: 457 opt: 457 Z-score: 658.6 bits: 127.1 E(): 4.8e-28 Smith-Waterman score: 457; 98.571% identity (100.000% similar) in 70 aa overlap (9-78:1-70) 10 20 30 40 50 60 sh0283 AAAEGAAAMSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE 10 20 30 40 50 70 80 90 sh0283 PAADGKGVVVVIKRRSGEFCLVWARERPLSRVWEL :::::::::::::::::. gi|613 PAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIR 60 70 80 90 100 110 95 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 16:47:46 2008 done: Wed Aug 13 16:50:56 2008 Total Scan time: 477.080 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]