hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-16564632/chunk_1/iprscan-20080813-16564632.nocrc
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Query sequence: sh02887
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00784.8.ls MyTH4 domain                                   196.7      5e-56   1
PF00784.8.fs MyTH4 domain                                   194.9    1.8e-55   1
PF00018.18.ls SH3 domain                                       9.9     0.0017   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00018.18.ls   1/1     222   285 ..     1    59 []     9.9   0.0017
PF00784.8.fs   1/1     405   511 ..     1   122 []   194.9  1.8e-55
PF00784.8.ls   1/1     405   511 ..     1   122 []   196.7    5e-56

Alignments of top-scoring domains:
PF00018.18.ls: domain 1 of 1, from 222 to 285: score 9.9, E = 0.0017
                   *->kkvvAL..YDYearesdELsFkkGDvitvleksdd....pgWWkgrl
                      k+vvAL++ + +++es+ LsF kGD i++  ++ ++  ++gW  g +
     sh02887   222    KYVVALqdNPNPGEESGFLSFAKGDLIILDHDTGEqvmnSGWANGIN 268  

                   kgtgGkeGliPsNYVepv<-*
                    +t+ ++G +P+ +V  +   
     sh02887   269 ERTK-QRGDFPTDCVYVM    285  

PF00784.8.fs: domain 1 of 1, from 405 to 511: score 194.9, E = 1.8e-55
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                      rs+++l+++I++ ++k+++L+DE+Y+Qi+KQlt+N++  ++S++rGW
     sh02887   405    RSVNELTDQIFEGPLKAEPLKDEAYVQILKQLTDNHI--RYSEERGW 449  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk
                   eLl+lctg+FpPS++ll++++ +Fl++r+h+++        a+dc++rL+
     sh02887   450 ELLWLCTGLFPPSNILLPHVQ-RFLQSRKHCPL--------AIDCLQRLQ 490  

                   iYktqknGYqsRkypPsrlEieAik<-*
                     k+ +nG  sRkypP+++E+eAi+   
     sh02887   491 --KALRNG--SRKYPPHLVEVEAIQ    511  

PF00784.8.ls: domain 1 of 1, from 405 to 511: score 196.7, E = 5e-56
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                      rs+++l+++I++ ++k+++L+DE+Y+Qi+KQlt+N++  ++S++rGW
     sh02887   405    RSVNELTDQIFEGPLKAEPLKDEAYVQILKQLTDNHI--RYSEERGW 449  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk
                   eLl+lctg+FpPS++ll++++ +Fl++r+h+++        a+dc++rL+
     sh02887   450 ELLWLCTGLFPPSNILLPHVQ-RFLQSRKHCPL--------AIDCLQRLQ 490  

                   iYktqknGYqsRkypPsrlEieAik<-*
                     k+ +nG  sRkypP+++E+eAi+   
     sh02887   491 --KALRNG--SRKYPPHLVEVEAIQ    511  

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