hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-16564632/chunk_1/iprscan-20080813-16564632.nocrc
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Query sequence: sh02887
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00139                                                 216.2    2.9e-60   1
SM00295                                                 203.0    2.8e-56   1
SM00326                                                  39.1    5.9e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00326    1/1     222   286 ..     1    58 []    39.1  5.9e-07
SM00139    1/1     362   511 ..     1   166 []   216.2  2.9e-60
SM00295    1/1     513   730 ..     1   232 []   203.0  2.8e-56

Alignments of top-scoring domains:
SM00326: domain 1 of 1, from 222 to 286: score 39.1, E = 5.9e-07
                   *->eyvvAlYDyea..qnedELsFkkGDiitvleks.....ddgWweGel
                      +yvvAl D   ++++++ LsF kGD i++  +++++  ++gW  G +
     sh02887   222    KYVVALQDNPNpgEESGFLSFAKGDLIILDHDTgeqvmNSGWANGIN 268  

                   nrtGkeGlfPsnYVeeie<-*
                    rt ++G fP+ +V +++   
     sh02887   269 ERTKQRGDFPTDCVYVMP    286  

SM00139: domain 1 of 1, from 362 to 511: score 216.2, E = 2.9e-60
                   *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk
                      ++++P+k++LLk++ ++ee+s+eA+ +F+a+Lk+MGD+P+++     
     sh02887   362    HTREPLKQALLKKLLGSEELSQEACLAFIAVLKYMGDYPSKR----- 403  

                   lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt
                                   ++s +el+++I++ +l++++L+DE Y+Q+ KQlt
     sh02887   404 ----------------TRSVNELTDQIFEGPLKAEPLKDEAYVQILKQLT 437  

                   k........RGWeLLylctglFpPSeSrllkyLlqFLkrradqptetpql
                   +++ + +++RGWeLL+lctglFpPS+  ll+++++FL++r+++p  +   
     sh02887   438 DnhiryseeRGWELLWLCTGLFPPSN-ILLPHVQRFLQSRKHCPLAID-- 484  

                   maqglakycleGaRkqpPsrlEleAik<-*
                    +q l+k+  +G+Rk+pP+++E+eAi+   
     sh02887   485 CLQRLQKALRNGSRKYPPHLVEVEAIQ    511  

SM00295: domain 1 of 1, from 513 to 730: score 203.0, E = 2.8e-56
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      + +++++kVy++d+t + fev+sst+a+++++ ++ +l l  ++se+
     sh02887   513    KTTQIFHKVYFPDDTDEAFEVESSTKAKDFCQNIATRLLL--KSSEG 557  

                   FgLqfedkded................shWldpaktilkqdvkspksepl
                   F+L++++ d++ + ++++   +  ++ ++W++ a++i++++v    s+++
     sh02887   558 FSLFVKIADKVisvpendfffdfvrhlTDWIKKARPIKDGIVP---SLTY 604  

                   tlyFRvkFyppdwhgppeqlkeDptryn.llylQvrddilsGrlpcpsee
                   +++F++k+++++      ++  Dp + + ++y+Q    +l+G+++c+ +e
     sh02887   605 QVFFMKKLWTTT------VPGKDPMADSiFHYYQELPKYLRGYHKCT-RE 647  

                   eallLAaLalqaefGdydpeeeekkkslkhvakelslkrflPkqlldsik
                   e l+L+aL++++ f +++++           +++++l++++P++l+++++
     sh02887   648 EVLQLGALIYRVKFEEDKSY---------FPSIPKLLRELVPQDLIRQVS 688  

                   asflqiqltlkewrerIvelhkehaglspeeaklkYLelarrLpptYGve
                            +++w++ Iv+++++hag+s eeakl +L+l+ ++p t+G++
     sh02887   689 ---------PDDWKRSIVAYFNKHAGKSKEEAKLAFLKLIFKWP-TFGSA 728  

                   lF<-*
                   +F   
     sh02887   729 FF    730  

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