hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090630/iprscan-20090630-19162409/chunk_1/iprscan-20090630-19162409.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sh03709s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.ls Myosin head (motor domain) 905.1 2.8e-269 1 PF00063.11.fs Myosin head (motor domain) 903.2 1.1e-268 1 PF06017.4.ls Myosin tail 237.0 3.6e-68 1 PF06017.4.fs Myosin tail 235.2 1.3e-67 1 PF00612.17.ls IQ calmodulin-binding motif 12.2 1.8 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.fs 1/1 19 702 .. 1 791 [] 903.2 1.1e-268 PF00063.11.ls 1/1 19 702 .. 1 791 [] 905.1 2.8e-269 PF06017.4.fs 1/1 822 1025 .. 1 242 [] 235.2 1.3e-67 PF06017.4.ls 1/1 822 1025 .. 1 242 [] 237.0 3.6e-68 Alignments of top-scoring domains: PF00063.11.fs: domain 1 of 1, from 19 to 702: score 903.2, E = 1.1e-268 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +D+v+L +++ + + NL+ R+ ++ IYTY+G vLvsvNPY++Lp sh03709s1 19 KPDFVLLDQVTMEDFMRNLQLRFE-KGRIYTYIGEVLVSVNPYQELP 64 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA +Y++e i+ Y G+ +E pPH++A+A++AY++M+++ ++ +I+isGESGA sh03709s1 65 LYGPEAIARYQGRELYERPPHLYAVANAAYKAMKHRSRDTCIVISGESGA 114 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKTE++K++mqY+A+v+ ++ +e+++++d++l s +LEA sh03709s1 115 GKTEASKHIMQYIAAVTNPSQ---------RAEVERVKDVLLKSTCVLEA 155 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNA T RN NSSRFGK++ I+Fd +G++ +Gg+I YLLEKSRV + sh03709s1 156 FGNARTNRNHNSSRFGKYMDINFDFKGDP----IGGHIHSYLLEKSRVLK 201 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q gERNFH FYQLL g +++ + eL+L++ +p Y+++ q++ n + sh03709s1 202 QHVGERNFHAFYQLLRGSEDKQ-LHELHLER--NPAVYNFTHQGAGLNMT 248 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk + D + + + +A+++iGf+ ee +s+ rilAAILhLGNie F+ sh03709s1 249 VHS-ALDSDEQSHQAVTEAMRVIGFSPEEVESVHRILAAILHLGNIE-FV 296 qdqat.TGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrri.k ++ + + +e+ A + +++ + +aeL + +++Ll r++ + sh03709s1 297 ETEEGgLQKEGLA----VAEEAL-VDHVAELTATPRDLVLRSLLARTVaS 341 tGgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsak G re + k+ + +A+yaRDA AKa Y RLF W+V++iN +++ sh03709s1 342 GG-----RELIEKGHTAAEASYARDACAKAVYQRLFEWVVNRINSVMEPR 386 eQasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFae + ++ d + +IGvLDIyGFE+F sh03709s1 387 G---R---------------------DPRRDGKDTVIGVLDIYGFEVF-P 411 kNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqa +NSFEQ+cINY+NEKLQQ+F+++++k EQEEY+rEgI+W ++y ++n + sh03709s1 412 VNSFEQFCINYCNEKLQQLFIQLILKQEQEEYEREGITWQSVEY-FNNAT 460 cidLIEkKkPpGIlslLDEeCrfPka.tDqtFldKLlqtfsskhprlthF ++dL+E + GIl+ LDE+C tD Fl+ L ++ +h+ h+ sh03709s1 461 IVDLVER-PHRGILAVLDEACSSAGTiTDRIFLQTLDTHH-RHHL---HY 505 AqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisl ++ + k+ + F+ikHYAGdV+Y++egf++KN+D+Lf+d l sh03709s1 506 TSRQ-LCPTDKTMEFGRDFRIKHYAGDVTYSVEGFIDKNRDFLFQDFKRL 554 lksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklgs l S+d p+l+ +p+ + sh03709s1 555 LYNSTD-PTLRAMWPD---------------------------------G 570 gkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekK + ++k++ T+g +fk+s+ +L+++L s +P +vRCIKPNe K sh03709s1 571 QQDITEVTKRP-LTAGTLFKNSMVALVENLASK---EPFYVRCIKPNEDK 616 kagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapk ag++D+ ++hQ+ +lG+LE ++R+rraGF++R+++++Fl RY++ ++ sh03709s1 617 VAGKLDENHCRHQVAYLGLLE-NVRVRRAGFASRQPYSRFLLRYKMTCEY 665 twpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* twp + g++k ++ ++L+++ +l ++++fG++K F+R sh03709s1 666 TWPNH----LLGSDKAAVSALLEQH-----GL-QGDVAFGHSKLFIR 702 PF00063.11.ls: domain 1 of 1, from 19 to 702: score 905.1, E = 2.8e-269 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp +D+v+L +++ + + NL+ R+ ++ IYTY+G vLvsvNPY++Lp sh03709s1 19 KPDFVLLDQVTMEDFMRNLQLRFE-KGRIYTYIGEVLVSVNPYQELP 64 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA +Y++e i+ Y G+ +E pPH++A+A++AY++M+++ ++ +I+isGESGA sh03709s1 65 LYGPEAIARYQGRELYERPPHLYAVANAAYKAMKHRSRDTCIVISGESGA 114 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKTE++K++mqY+A+v+ ++ +e+++++d++l s +LEA sh03709s1 115 GKTEASKHIMQYIAAVTNPSQ---------RAEVERVKDVLLKSTCVLEA 155 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNA T RN NSSRFGK++ I+Fd +G++ +Gg+I YLLEKSRV + sh03709s1 156 FGNARTNRNHNSSRFGKYMDINFDFKGDP----IGGHIHSYLLEKSRVLK 201 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q gERNFH FYQLL g +++ + eL+L++ +p Y+++ q++ n + sh03709s1 202 QHVGERNFHAFYQLLRGSEDKQ-LHELHLER--NPAVYNFTHQGAGLNMT 248 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk + D + + + +A+++iGf+ ee +s+ rilAAILhLGNie F+ sh03709s1 249 VHS-ALDSDEQSHQAVTEAMRVIGFSPEEVESVHRILAAILHLGNIE-FV 296 qdqat.TGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrri.k ++ + + +e+ A + +++ + +aeL + +++Ll r++ + sh03709s1 297 ETEEGgLQKEGLA----VAEEAL-VDHVAELTATPRDLVLRSLLARTVaS 341 tGgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsak G re + k+ + +A+yaRDA AKa Y RLF W+V++iN +++ sh03709s1 342 GG-----RELIEKGHTAAEASYARDACAKAVYQRLFEWVVNRINSVMEPR 386 eQasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFae + ++ d + +IGvLDIyGFE+F sh03709s1 387 G---R---------------------DPRRDGKDTVIGVLDIYGFEVF-P 411 kNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqa +NSFEQ+cINY+NEKLQQ+F+++++k EQEEY+rEgI+W ++y ++n + sh03709s1 412 VNSFEQFCINYCNEKLQQLFIQLILKQEQEEYEREGITWQSVEY-FNNAT 460 cidLIEkKkPpGIlslLDEeCrfPka.tDqtFldKLlqtfsskhprlthF ++dL+E + GIl+ LDE+C tD Fl+ L ++ +h+ h+ sh03709s1 461 IVDLVER-PHRGILAVLDEACSSAGTiTDRIFLQTLDTHH-RHHL---HY 505 AqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisl ++ + k+ + F+ikHYAGdV+Y++egf++KN+D+Lf+d l sh03709s1 506 TSRQ-LCPTDKTMEFGRDFRIKHYAGDVTYSVEGFIDKNRDFLFQDFKRL 554 lksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklgs l S+d p+l+ +p+ + sh03709s1 555 LYNSTD-PTLRAMWPD---------------------------------G 570 gkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekK + ++k++ T+g +fk+s+ +L+++L s +P +vRCIKPNe K sh03709s1 571 QQDITEVTKRP-LTAGTLFKNSMVALVENLASK---EPFYVRCIKPNEDK 616 kagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapk ag++D+ ++hQ+ +lG+LE ++R+rraGF++R+++++Fl RY++ ++ sh03709s1 617 VAGKLDENHCRHQVAYLGLLE-NVRVRRAGFASRQPYSRFLLRYKMTCEY 665 twpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* twp + g++k ++ ++L+++ +l ++++fG++K F+R sh03709s1 666 TWPNH----LLGSDKAAVSALLEQH-----GL-QGDVAFGHSKLFIR 702 PF06017.4.fs: domain 1 of 1, from 822 to 1025: score 235.2, E = 1.3e-67 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase +Kv+A+ +++G ++++++ R++ DYL+ ++++ + ++++ sh03709s1 822 AKVAAMGALQGLRQDWGCR----RAWARDYLSSAT-DNPTASSLFAQ 863 egqiikELR.kd.FgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkal k+LR+kd+Fg VlF+++ V+KvnR ++K+++RaLlLTd++l sh03709s1 864 RL---KTLRdKDgFGAVLFSSH----VRKVNR--FHKIRNRALLLTDQHL 904 ylvdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvked y++d + ++y ++r +Pl+++t++S++++ D+l+V+H sh03709s1 905 YKLD----------PDRQYRVMRAVPLEAVTGLSVTSGGDQLVVLHA--- 941 lakgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsd +g+ Dlv++l++ P++++R++Elv+vL ++++++++ +l+v+ +sd sh03709s1 942 --RGQDDLVVCLHRSRPPLDNRVGELVGVLAAHCQGEGR--TLEVR-VSD 986 sieyrlkkekwgpGktktvkfqkdatggsellifKkkkghlvsiapq<-* +i + ++ ++++++++++ +++++f+ +g +++ +p sh03709s1 987 CIPLSHRG--------VRRLISVEPRPEQPEPDFRCARGSFTLLWPS 1025 PF06017.4.ls: domain 1 of 1, from 822 to 1025: score 237.0, E = 3.6e-68 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase +Kv+A+ +++G ++++++ R++ DYL+ ++++ + ++++ sh03709s1 822 AKVAAMGALQGLRQDWGCR----RAWARDYLSSAT-DNPTASSLFAQ 863 egqiikELR.kd.FgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkal k+LR+kd+Fg VlF+++ V+KvnR ++K+++RaLlLTd++l sh03709s1 864 RL---KTLRdKDgFGAVLFSSH----VRKVNR--FHKIRNRALLLTDQHL 904 ylvdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvked y++d + ++y ++r +Pl+++t++S++++ D+l+V+H sh03709s1 905 YKLD----------PDRQYRVMRAVPLEAVTGLSVTSGGDQLVVLHA--- 941 lakgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsd +g+ Dlv++l++ P++++R++Elv+vL ++++++++ +l+v+ +sd sh03709s1 942 --RGQDDLVVCLHRSRPPLDNRVGELVGVLAAHCQGEGR--TLEVR-VSD 986 sieyrlkkekwgpGktktvkfqkdatggsellifKkkkghlvsiapq<-* +i + ++ ++++++++++ +++++f+ +g +++ +p sh03709s1 987 CIPLSHRG--------VRRLISVEPRPEQPEPDFRCARGSFTLLWPS 1025 //