hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090630/iprscan-20090630-19162409/chunk_1/iprscan-20090630-19162409.nocrc
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Query sequence: sh03709s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1147.3          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      11   716 ..     1   771 []  1147.3        0

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 11 to 716: score 1147.3, E = 0
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                      +++ ++ g  D+vlL++++++ ++ NL+ R++k+ IYTYiG vLv+v
   sh03709s1    11    DEEGPEYGKPDFVLLDQVTMEDFMRNLQLRFEKGRIYTYIGEVLVSV 57   

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                   NPY++l p+Y++e i++Y+      G++++E pPH++A+A++AY++M+++
   sh03709s1    58 NPYQEL-PLYGPEAIARYQ------GRELYERPPHLYAVANAAYKAMKHR 100  

                   keNQsIiISGESGAGKTEatKkimqYLAavsg.....svesvedqiLesN
                   +++ +I+ISGESGAGKTEa+K+imqY+Aav++++++ +ve+v+d++L+s+
   sh03709s1   101 SRDTCIVISGESGAGKTEASKHIMQYIAAVTNpsqraEVERVKDVLLKST 150  

                   PiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVV
                   ++LEAFGNA T RN NSSRFGK+++I+Fd+kG+++G++I  YLLEKSRV 
   sh03709s1   151 CVLEAFGNARTNRNHNSSRFGKYMDINFDFKGDPIGGHIHSYLLEKSRVL 200  

                   sQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfa
                   +Q  gERN+H FYQLL+G  + +++el+L++   +p  Y+++ qg+    
   sh03709s1   201 KQHVGERNFHAFYQLLRGSEDKQLHELHLER---NPAVYNFTHQGA---- 243  

                   nkryssgcltvd.giD.DaeeFkeTdEvtlkAmrvlGfseeEqesIFril
                        + + tv +  D+D +  ++++E    Amrv+Gfs eE+es+ ril
   sh03709s1   244 -----GLNMTVHsALDsDEQSHQAVTE----AMRVIGFSPEEVESVHRIL 284  

                   AAILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLek
                   AAILHLGNieF e+++ g+ + ++ + va e  ++ +AeL   + +  ++
   sh03709s1   285 AAILHLGNIEFVETEE-GGLQKEGLA-VAEEALVDHVAELTATPRDLVLR 332  

                   aLtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrIN
                   +L+ R++  gg   + i k ++  +A+yaRDA AKa+Y RLF W+V+rIN
   sh03709s1   333 SLLARTVASGGR--ELIEKGHTAAEASYARDACAKAVYQRLFEWVVNRIN 380  

                   ksl...........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQf
                   + ++++++++++++++++IGVLDIyGFE+F +NSFEQfCINy+NEKLQQ+
   sh03709s1   381 SVMeprgrdprrdgKDTVIGVLDIYGFEVFPVNSFEQFCINYCNEKLQQL 430  

                   FnqhvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlsl
                   F+q+++K+EQEEYerEGI W  +++f  +N  ++DL+E +   + GIl+ 
   sh03709s1   431 FIQLILKQEQEEYEREGITWQSVEYF--NNATIVDLVERP---HRGILAV 475  

                   LDEeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkk.gkp
                   LDE+C     +  TD  Fl+ L     ++hh  h h+++     ++ +  
   sh03709s1   476 LDEACSS--AGTITDRIFLQTL-----DTHHRHHLHYTS-----RQlCPT 513  

                   .kkrfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpli
                   +k+ +  ++F+ikHYAGdVtY+veGF++KN+D+Lf+d++ Ll +S++p +
   sh03709s1   514 dKTMEFGRDFRIKHYAGDVTYSVEGFIDKNRDFLFQDFKRLLYNSTDPTL 563  

                   asLFpeeadqsssaakekssggagksrkagrrepskgtisskkrppTvGs
                   + ++p++  + ++                           ++krp T+G+
   sh03709s1   564 RAMWPDGQQDITE---------------------------VTKRPLTAGT 586  

                   qFk.sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvL
                   +Fk+s+  L+e+L+s++P+++RCIKPNe K +g+ d+  ++hQ+ ylG+L
   sh03709s1   587 LFKnSMVALVENLASKEPFYVRCIKPNEDKVAGKLDENHCRHQVAYLGLL 636  

                   EniRIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkac
                   En+R+RraGF++R+p+++Fl RYk+ + +twp+        l g++k+a+
   sh03709s1   637 ENVRVRRAGFASRQPYSRFLLRYKMTCEYTWPNH-------LLGSDKAAV 679  

                   ealLqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                    alL+++g         ++++++G++K+F+R+p++l  LE+ R +   
   sh03709s1   680 SALLEQHG--------LQGDVAFGHSKLFIRSPRTLVTLEQSRAR    716  

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