hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17595139/chunk_1/iprscan-20090618-17595139.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: sh03843
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00664.13.ls ABC transporter transmembrane region       211.1    2.4e-60   1
PF00664.13.fs ABC transporter transmembrane region       210.8    2.9e-60   1
PF00005.17.ls ABC transporter                            187.9    2.2e-53   1
PF00005.17.fs ABC transporter                            186.1    7.7e-53   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00664.13.fs   1/1     153   365 ..     1   224 [.   210.8  2.9e-60
PF00664.13.ls   1/1     153   424 ..     1   286 []   211.1  2.4e-60
PF00005.17.fs   1/1     497   679 ..     1   224 []   186.1  7.7e-53
PF00005.17.ls   1/1     497   679 ..     1   224 []   187.9  2.2e-53

Alignments of top-scoring domains:
PF00664.13.fs: domain 1 of 1, from 153 to 365: score 210.8, E = 2.9e-60
                   *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli
                      l++++++l+la++ + + +p ++gr++d+   l  ++d+h++ s+++
     sh03843   153    LVAAFFFLVLAVLGETL-IPHYSGRVIDI---LGGDFDPHAFASAIF 195  

                   slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf
                   ++++   +++ +  g+  ++++y+  ++r++ r+r +lf++llrq+lg+f
     sh03843   196 FMCLF-SFGSSLSAGCRGGCFTYT--MSRINLRIREQLFSSLLRQDLGFF 242  

                   dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy
                   ++    +++Gel+sRl++D+  ++++l+++  +l++sl+ vvg++++m+ 
     sh03843   243 QE----TKTGELNSRLSSDTTLMSNWLPLNANVLLRSLVKVVGLYGFMLS 288  

                   yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls
                   +s++LtL+ l+ +p  i++ +v++ +++++ r+ q+a+a ag+v++E+++
     sh03843   289 ISPRLTLLSLLHMPFTIAAEKVYNTRHQEVLREIQDAVARAGQVVREAVG 338  

                   girTVkafgrEeyelerydkaledaek<-*
                   g++TV++fg+Ee+e+ ry++ale +++   
     sh03843   339 GLQTVRSFGAEEHEVCRYKEALEQCRQ    365  

PF00664.13.ls: domain 1 of 1, from 153 to 424: score 211.1, E = 2.4e-60
                   *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli
                      l++++++l+la++ + + +p ++gr++d+   l  ++d+h++ s+++
     sh03843   153    LVAAFFFLVLAVLGETL-IPHYSGRVIDI---LGGDFDPHAFASAIF 195  

                   slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf
                   ++++   +++ +  g+  ++++y+  ++r++ r+r +lf++llrq+lg+f
     sh03843   196 FMCLF-SFGSSLSAGCRGGCFTYT--MSRINLRIREQLFSSLLRQDLGFF 242  

                   dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy
                   ++    +++Gel+sRl++D+  ++++l+++  +l++sl+ vvg++++m+ 
     sh03843   243 QE----TKTGELNSRLSSDTTLMSNWLPLNANVLLRSLVKVVGLYGFMLS 288  

                   yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls
                   +s++LtL+ l+ +p  i++ +v++ +++++ r+ q+a+a ag+v++E+++
     sh03843   289 ISPRLTLLSLLHMPFTIAAEKVYNTRHQEVLREIQDAVARAGQVVREAVG 338  

                   girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls
                   g++TV++fg+Ee+e+ ry++ale +++ + ++    +l   +   + + +
     sh03843   339 GLQTVRSFGAEEHEVCRYKEALEQCRQLYWRRDLERALYLLVRRVLHLGV 388  

                   yalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-*
                   + l+l +G +     ++g l+ g+l +f+ +  ++   +   
     sh03843   389 QMLMLSCGLQQ---MQDGELTQGSLLSFMIYQESVGSYV    424  

PF00005.17.fs: domain 1 of 1, from 497 to 679: score 186.1, E = 7.7e-53
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd
                      Gev+alvGpNG+GKST + ll  l++ Pt   G++lld++p      
     sh03843   497    GEVTALVGPNGSGKSTVAALLQNLYQ-PT--GGQVLLDEKP------ 534  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke
                      +s++e++ l+ ++  v Q+p lf   +++vr n+aygl++       
     sh03843   535 ---ISQYEHCYLHSQVVSVGQEPVLF---SGSVRNNIAYGLQSC------ 572  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt
                                 d+++ +a+  ++ +d+++      g+ t++ge++++
     sh03843   573 -------------EDDKVMAAAQAAHADDFIQE--MEHGIYTDVGEKGSQ 607  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrgeq
                   L  GqkQR+aiARal+++p++L+LDE+T++LD+    q +++l++++++ 
     sh03843   608 LAAGQKQRLAIARALVRDPRVLILDEATSALDV----QCEQALQDWNSRG 653  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   gitvllitHdldlldrladrilvlenG<-*
                    +tvl+i H+l+ + r a  ilvl++G   
     sh03843   654 DRTVLVIAHRLQAVQR-AHQILVLQEG    679  

PF00005.17.ls: domain 1 of 1, from 497 to 679: score 187.9, E = 2.2e-53
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd
                      Gev+alvGpNG+GKST + ll  l++ Pt   G++lld++p      
     sh03843   497    GEVTALVGPNGSGKSTVAALLQNLYQ-PT--GGQVLLDEKP------ 534  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke
                      +s++e++ l+ ++  v Q+p lf   +++vr n+aygl++       
     sh03843   535 ---ISQYEHCYLHSQVVSVGQEPVLF---SGSVRNNIAYGLQSC------ 572  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt
                                 d+++ +a+  ++ +d+++      g+ t++ge++++
     sh03843   573 -------------EDDKVMAAAQAAHADDFIQE--MEHGIYTDVGEKGSQ 607  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrgeq
                   L  GqkQR+aiARal+++p++L+LDE+T++LD+    q +++l++++++ 
     sh03843   608 LAAGQKQRLAIARALVRDPRVLILDEATSALDV----QCEQALQDWNSRG 653  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   gitvllitHdldlldrladrilvlenG<-*
                    +tvl+i H+l+ + r a  ilvl++G   
     sh03843   654 DRTVLVIAHRLQAVQR-AHQILVLQEG    679  

//