hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17595139/chunk_1/iprscan-20090618-17595139.nocrc
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Query sequence: sh03843
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00958 3a01208: antigen peptide transporter 2        1521.0          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00958   1/1       2   698 ..     1   770 []  1521.0        0

Alignments of top-scoring domains:
TIGR00958: domain 1 of 1, from 2 to 698: score 1521.0, E = 0
                   *->aalayllpwlsLllvdwaLlfdllqgifglsillpfekgllvlwlvg
                      ++l++l+pw+sLllvd+aLl+ llqg++g+  llp  +gl++lwl+g
     sh03843     2    MRLPDLRPWTSLLLVDAALLW-LLQGPLGT--LLP--QGLPGLWLEG 43   

                   llRlgvlwlgalgillnkvgAqgllaalkplvfalaLatpslsslrlLaf
                   +lRlg+lw+      l+k++  gll+++++l+++l+Latp+++slr+L++
     sh03843    44 TLRLGGLWG------LLKLR--GLLGFVGTLLLPLCLATPLTVSLRALVA 85   

                   lealdpavrlalglWsSrpdalvwsylaallaaalWtklfssnPfDyhrL
                   +++++p++r+a+++Ws    +l+++y+aa l+++lW++l++         
     sh03843    86 GASRAPPARVASAPWS----WLLVGYGAAGLSWSLWAVLSP--------- 122  

                   ltevAertGaseketdAEdaerlrnaqeqsetadykketfkllfRLLgll
                          +Ga+eke            q+q +++        l++RLL+l+
     sh03843   123 -------PGAQEKE------------QDQVNNKV-------LMWRLLKLS 146  

                   grdwklLilafvfLvlsslgemfIPyYtGrVidtlvgdkgSDypaLasai
                   ++d++lL++af+fLvl++lge++IP+Y+GrVid+l+gd++  ++a+asai
     sh03843   147 RPDLPLLVAAFFFLVLAVLGETLIPHYSGRVIDILGGDFD--PHAFASAI 194  

                   fiMcllslaSsvlaGlrgGsAAnFGRFiLFnyamarinlrIRedLFrslL
                   f+Mcl+s++Ss++aG+rgG+         F+y+m+rinlrIRe+LF+slL
     sh03843   195 FFMCLFSFGSSLSAGCRGGC---------FTYTMSRINLRIREQLFSSLL 235  

                   rQDigFFdenKTGeltSRLssDtqtmSrslslnvNvllRnLvmllGllgF
                   rQD+gFF+e+KTGel+SRLssDt++mS++l+ln+NvllR+Lv+++Gl+gF
     sh03843   236 RQDLGFFQETKTGELNSRLSSDTTLMSNWLPLNANVLLRSLVKVVGLYGF 285  

                   MlslSprLtlvtLinlPlvflaeKvfGkryqllseelQeavAkanqVAeE
                   Mls+SprLtl++L+++P++++aeKv+++r+q++++e+Q+avA+a+qV++E
     sh03843   286 MLSISPRLTLLSLLHMPFTIAAEKVYNTRHQEVLREIQDAVARAGQVVRE 335  

                   aLSgmrTVRSFaaEegEasRFkekLeetlqlnkkkalayalylwttellg
                   a++g++TVRSF+aEe+E++R+ke+Le+++ql+++++l++alyl+++++l+
     sh03843   336 AVGGLQTVRSFGAEEHEVCRYKEALEQCRQLYWRRDLERALYLLVRRVLH 385  

                   mlilvlvLyyGgqLVltgkvssGlLvSFlLYQeqlGeaVrvLsyvYsglm
                   +++++l+L +G q++++g++++G+L+SF++YQe++G++V++L+y+Y++++
     sh03843   386 LGVQMLMLSCGLQQMQDGELTQGSLLSFMIYQESVGSYVQTLVYIYGDML 435  

                   qaVGASeKVFeYlDRkPqipltGtlaPknleGkieFqDVsFsYPnRPdvp
                   ++VGA+eKVF+Y+DR+P++p++GtlaP++l+G+++FqDVsF+YPnRPd+p
     sh03843   436 SNVGAAEKVFSYMDRQPNLPSPGTLAPTTLQGVVKFQDVSFAYPNRPDRP 485  

                   VLkgLTFTlePGevvALVGPsGsGKSTvaaLLqnlYqPTgGqvLlDGvPl
                   VLkgLTFTl+PGev+ALVGP+GsGKSTvaaLLqnlYqPTgGqvLlD++P+
     sh03843   486 VLKGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDEKPI 535  

                   sqydHhYLHrqValVGQEPVLfsGSvreNIaYGLtktpTdeevtaaAkaa
                   sqy+H+YLH+qV++VGQEPVLfsGSvr+NIaYGL++++ d++v+aaA+aa
     sh03843   536 SQYEHCYLHSQVVSVGQEPVLFSGSVRNNIAYGLQSCE-DDKVMAAAQAA 584  

                   nAHdFIselpnGYdTevGEkGsQLSGGQKQRiAIARALvRkPrVLILDEA
                   +A+dFI+e+++G++T+vGEkGsQL++GQKQR+AIARALvR+PrVLILDEA
     sh03843   585 HADDFIQEMEHGIYTDVGEKGSQLAAGQKQRLAIARALVRDPRVLILDEA 634  

                   TSALDaesqlevEqllqeAlsrsrksrTVllIAhRLstverAdkilVLkk
                   TSALD+    ++Eq+lq+  ++sr++rTVl+IAhRL+ v+rA++ilVL++
     sh03843   635 TSALDV----QCEQALQD--WNSRGDRTVLVIAHRLQAVQRAHQILVLQE 678  

                   GsvvemGtHkqLmedegvYkqLV<-*
                   G++++   ++qL e +++Y+ LV   
     sh03843   679 GKLQK---LAQLQEGQDLYSRLV    698  

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