hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-17365614/chunk_1/iprscan-20080813-17365614.nocrc
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Query sequence: sh03965
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00045                                                 162.2      5e-44   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00045      1/1       2   121 ..     1   195 []   162.2    5e-44

Alignments of top-scoring domains:
SM00045: domain 1 of 1, from 2 to 121: score 162.2, E = 5e-44
                   *->iMNNYFSiGvDAkiaLeFHnsREanPekFnSRlkNKlwYfelGtkel
                                         + R a                   ++++
     sh03965     2    -------------------VLRRA-------------------FSDF 10   

                   fartcKdLheqIeLecDGvdidlpnkdlslEGIivLNIPSygGGtnLWGe
                   ++ ++KdL+++I+++cDG+d++++++dl+++++++LNIP+y++Gt++WG+
     sh03965    11 LMGSSKDLAKHIRVVCDGMDLTPKIQDLKPQCVVFLNIPRYCAGTMPWGH 60   

                   PfgskkkravcgifkksftdkedlnfekqsidDgllEVVGvtgamhmaqv
                                     ++++ ++fe+q++dDg+lEV+G+t++ ++a+ 
     sh03965    61 ------------------PGEH-HDFEPQRHDDGYLEVIGFTMTSLAAL- 90   

                   rtsiqvglasiilvkllKgrRiaQCsevrlkdtiltkktiPmQVDGEP<-
                       qvg++         g+R++QC+ev    +++t+k+iP+QVDGEP  
     sh03965    91 ----QVGGH---------GERLTQCREV----VLTTSKAIPVQVDGEP   121  

                   *
                    
     sh03965     -   -    

//