hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-17430977/chunk_1/iprscan-20080813-17430977.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sh04217 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00092.18.fs von Willebrand factor type A domain 489.2 2e-153 5 PF00092.18.ls von Willebrand factor type A domain 431.1 1.4e-126 4 PF01391.8.ls Collagen triple helix repeat (20 copies) 225.2 1.3e-64 5 PF01391.8.fs Collagen triple helix repeat (20 copies) 222.7 7.6e-64 6 PF00014.13.fs Kunitz/Bovine pancreatic trypsin inhibito 103.4 1.3e-35 1 PF00014.13.ls Kunitz/Bovine pancreatic trypsin inhibito 105.4 1.6e-28 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00092.18.ls 1/4 1 134 [. 1 195 [] 73.0 8.7e-19 PF00092.18.fs 1/5 1 134 [. 43 195 .] 130.9 5.5e-41 PF00092.18.fs 2/5 164 337 .. 1 195 [] 163.0 4.4e-51 PF00092.18.ls 2/4 164 337 .. 1 195 [] 164.9 1.9e-46 PF01391.8.fs 1/6 563 622 .. 1 60 [] 46.4 1.3e-11 PF01391.8.ls 1/5 563 622 .. 1 60 [] 48.4 2.2e-11 PF01391.8.fs 2/6 629 688 .. 1 60 [] 49.6 1.8e-12 PF01391.8.ls 2/5 629 688 .. 1 60 [] 51.6 2.4e-12 PF01391.8.ls 3/5 699 758 .. 1 60 [] 37.6 4e-08 PF01391.8.fs 4/6 720 779 .. 1 60 [] 37.0 4.1e-09 PF01391.8.ls 4/5 759 818 .. 1 60 [] 34.2 4.3e-07 PF01391.8.fs 5/6 780 825 .. 1 46 [. 29.2 4.8e-07 PF01391.8.fs 6/6 839 898 .. 1 60 [] 51.5 5.7e-13 PF01391.8.ls 5/5 839 898 .. 1 60 [] 53.5 6.7e-13 PF00092.18.fs 4/5 927 1106 .. 1 195 [] 85.3 1.1e-26 PF00092.18.ls 3/4 927 1106 .. 1 195 [] 87.2 4.6e-23 PF00092.18.fs 5/5 1144 1335 .. 1 195 [] 104.0 1.5e-32 PF00092.18.ls 4/4 1144 1335 .. 1 195 [] 105.9 1.1e-28 PF00014.13.fs 1/1 1636 1688 .. 1 54 [] 103.4 1.3e-35 PF00014.13.ls 1/1 1636 1688 .. 1 54 [] 105.4 1.6e-28 Alignments of top-scoring domains: PF00092.18.ls: domain 1 of 4, from 1 to 134: score 73.0, E = 8.7e-19 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY g+vq+ sh04217 1 ------------------------------------------GVVQF 5 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs s+dv++ef+L++y+s + +l+a+ ++lr +gG+ NtgkAL+++++nlf sh04217 6 SNDVFPEFYLKTYRSQAPVLDAI-RRLRLRGGSPLNTGKALEFVARNLFV 54 stMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrdkkkgv + sagsR+++++p+ l+l+ Gks+d+ v + a+++r + sh04217 55 K-------SAGSRIeDGVPQHLVLVLGGKSQDD--VSrFAQVIRSS---- 91 gitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqeq gi+ ++vG +++d+ eL++i+ +p + vf+v++f++ l+ +i+e sh04217 92 GIVSLGVGD-RNIDRTELQtITNDP---RLVFTVREFRE--LP--NIEER 133 l<-* + sh04217 134 I 134 PF00092.18.fs: domain 1 of 5, from 1 to 134: score 130.9, E = 5.5e-41 *->glvqYssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALk g+vq+s+dv++ef+L++y+s + +l+a+ ++lr +gG+ NtgkAL+ sh04217 1 GVVQFSNDVFPEFYLKTYRSQAPVLDAI-RRLRLRGGSPLNTGKALE 46 yalenlfsstMikrnrsagsRp.enapkvlillTDGksndggsve.aaaa ++++nlf + sagsR+++++p+ l+l+ Gks+d+ v + a++ sh04217 47 FVARNLFVK-------SAGSRIeDGVPQHLVLVLGGKSQDD--VSrFAQV 87 lrdkkkgvgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwl +r + gi+ ++vG +++d+ eL++i+ +p + vf+v++f++ l sh04217 88 IRSS----GIVSLGVGD-RNIDRTELQtITNDP---RLVFTVREFRE--L 127 qlqdiqeql<-* + +i+e + sh04217 128 P--NIEERI 134 PF00092.18.fs: domain 2 of 5, from 164 to 337: score 163.0, E = 4.4e-51 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY DivFllDgS + +++ F++v +Fv+++v+ + d+++VglvqY sh04217 164 DIVFLLDGSINFRRDS-FQEVLRFVSEIVD-TVYEDGDSIQVGLVQY 208 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs +sd+++ef L+d+s+k ++++a+ +++ y+gG +Nt +L++ + n+f sh04217 209 NSDPTDEFFLKDFSTKRQIIDAI-NKVVYKGGRHANTKVGLEHLRVNHFV 257 stMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrdkkkgv + +agsR ++++p++++++T Gks ++ ++++al ++ sh04217 258 P-------EAGSRLdQRVPQIAFVITGGKSVED--AQdVSLALTQR---- 294 gitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqeq g++vfavGv +++d++e +ias++ ++f+v + ++l+ ++ eq sh04217 295 GVKVFAVGV-RNIDSEEVGkIASNS---ATAFRVGNVQELS----ELSEQ 336 l<-* + sh04217 337 V 337 PF00092.18.ls: domain 2 of 4, from 164 to 337: score 164.9, E = 1.9e-46 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY DivFllDgS + +++ F++v +Fv+++v+ + d+++VglvqY sh04217 164 DIVFLLDGSINFRRDS-FQEVLRFVSEIVD-TVYEDGDSIQVGLVQY 208 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs +sd+++ef L+d+s+k ++++a+ +++ y+gG +Nt +L++ + n+f sh04217 209 NSDPTDEFFLKDFSTKRQIIDAI-NKVVYKGGRHANTKVGLEHLRVNHFV 257 stMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrdkkkgv + +agsR ++++p++++++T Gks ++ ++++al ++ sh04217 258 P-------EAGSRLdQRVPQIAFVITGGKSVED--AQdVSLALTQR---- 294 gitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqeq g++vfavGv +++d++e +ias++ ++f+v + ++l+ ++ eq sh04217 295 GVKVFAVGV-RNIDSEEVGkIASNS---ATAFRVGNVQELS----ELSEQ 336 l<-* + sh04217 337 V 337 PF01391.8.fs: domain 1 of 6, from 563 to 622: score 46.4, E = 1.3e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G +Gp G Gp+G pG+ G +G pG+ G pGe+GpPG G G+ sh04217 563 GQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGF 609 pGppGapGapGpp<-* +G pG+ G +G + sh04217 610 QGCPGQRGVKGSR 622 PF01391.8.ls: domain 1 of 5, from 563 to 622: score 48.4, E = 2.2e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G +Gp G Gp+G pG+ G +G pG+ G pGe+GpPG G G+ sh04217 563 GQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGF 609 pGppGapGapGpp<-* +G pG+ G +G + sh04217 610 QGCPGQRGVKGSR 622 PF01391.8.fs: domain 2 of 6, from 629 to 688: score 49.6, E = 1.8e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G+ G G+ G++G++G pG +G++G+pG +G++Gp G +G+ G sh04217 629 GEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD 675 pGppGapGapGpp<-* G +G pG pG+ sh04217 676 VGIRGDPGNPGQD 688 PF01391.8.ls: domain 2 of 5, from 629 to 688: score 51.6, E = 2.4e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G+ G G+ G++G++G pG +G++G+pG +G++Gp G +G+ G sh04217 629 GEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGD 675 pGppGapGapGpp<-* G +G pG pG+ sh04217 676 VGIRGDPGNPGQD 688 PF01391.8.ls: domain 3 of 5, from 699 to 758: score 37.6, E = 4e-08 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G Gp+G pG G pG pG++G +G+ G +GppG++G G pG+pG+ sh04217 699 GDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGF 745 pGppGapGapGpp<-* G++G Ga Gp+ sh04217 746 EGEQGTRGAQGPA 758 PF01391.8.fs: domain 4 of 6, from 720 to 779: score 37.0, E = 4.1e-09 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G G++GppG++G++G pG++G+ G++G +G+ Gp Gp+GppG sh04217 720 GKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGL 766 pGppGapGapGpp<-* G++G +G+ G sh04217 767 IGEQGISGPRGSG 779 PF01391.8.ls: domain 4 of 5, from 759 to 818: score 34.2, E = 4.3e-07 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp+GppG G++G Gp+G G+aGapG++G G+ G+ G pG+pGp sh04217 759 GPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGP 805 pGppGapGapGpp<-* +G G+ G+ G+ sh04217 806 KGGIGNRGPRGET 818 PF01391.8.fs: domain 5 of 6, from 780 to 825: score 29.2, E = 4.8e-07 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppG< G++G pG++G +Gp G++G+pG++G++G G++G++G+ G +G++G sh04217 780 GAAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDG 825 -* sh04217 - - PF01391.8.fs: domain 6 of 6, from 839 to 898: score 51.5, E = 5.7e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG pGp+G pG+pG G +Gp+G +G +G++G+pG G++G pG sh04217 839 GFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGY 885 pGppGapGapGpp<-* pGp+G++G G sh04217 886 PGPAGPKGNRGDS 898 PF01391.8.ls: domain 5 of 5, from 839 to 898: score 53.5, E = 6.7e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG pGp+G pG+pG G +Gp+G +G +G++G+pG G++G pG sh04217 839 GFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGY 885 pGppGapGapGpp<-* pGp+G++G G sh04217 886 PGPAGPKGNRGDS 898 PF00092.18.fs: domain 4 of 5, from 927 to 1106: score 85.3, E = 1.1e-26 *->DivFllDgSgSigeenlFekvkdFvkklveknld....igpdgtrVg ++F+lD+S+++ ++ F +++d v ++v+ l+ ++ p+g rV+ sh04217 927 ELAFALDTSEGVNQDT-FGRMRDVVLSIVN-DLTiaesNCPRGARVA 971 lvqYssdvrtefsLndysskddllaav.lknlrylgGgTnNtgkALkyal +v+Y+++v+te+++ d+++k+ ll+++++ ++ ++ + +A+++++ sh04217 972 VVTYNNEVTTEIRFADSKRKSVLLDKIkNLQVALTSKQQS-LETAMSFVA 1020 enlfsstMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrd +n f++ R + +kv+++++ +++ ++a+++l d sh04217 1021 RNTFKR----------VRNgFLMRKVAVFFSNTPTRASPQLReAVLKLSD 1060 kkkgvgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlq + git++ + d++ ++ + + ++ gh+ ++ ++l+ sh04217 1061 A----GITPLFLTR--QEDRQLINaLQINNTAVGHALVLPAGRDLT---- 1100 diqeql<-* d+ e++ sh04217 1101 DFLENV 1106 PF00092.18.ls: domain 3 of 4, from 927 to 1106: score 87.2, E = 4.6e-23 *->DivFllDgSgSigeenlFekvkdFvkklveknld....igpdgtrVg ++F+lD+S+++ ++ F +++d v ++v+ l+ ++ p+g rV+ sh04217 927 ELAFALDTSEGVNQDT-FGRMRDVVLSIVN-DLTiaesNCPRGARVA 971 lvqYssdvrtefsLndysskddllaav.lknlrylgGgTnNtgkALkyal +v+Y+++v+te+++ d+++k+ ll+++++ ++ ++ + +A+++++ sh04217 972 VVTYNNEVTTEIRFADSKRKSVLLDKIkNLQVALTSKQQS-LETAMSFVA 1020 enlfsstMikrnrsagsRp.enapkvlillTDGksndggsve.aaaalrd +n f++ R + +kv+++++ +++ ++a+++l d sh04217 1021 RNTFKR----------VRNgFLMRKVAVFFSNTPTRASPQLReAVLKLSD 1060 kkkgvgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlq + git++ + d++ ++ + + ++ gh+ ++ ++l+ sh04217 1061 A----GITPLFLTR--QEDRQLINaLQINNTAVGHALVLPAGRDLT---- 1100 diqeql<-* d+ e++ sh04217 1101 DFLENV 1106 PF00092.18.fs: domain 5 of 5, from 1144 to 1335: score 104.0, E = 1.5e-32 *->DivFllDgSgSigeenlFekvkdFvkklveknld......igpdgtr D++F+lD+ + + + F+++k++++ lv+ +ld +++++ +++ r sh04217 1144 DMAFILDSAETTTLFQ-FNEMKKYIAYLVR-QLDmspdpkASQHFAR 1188 VglvqYssdvr..........tefsLndysskddllaavlknlrylgGgT V++vq + ++ + ++ ++efsL+dy sk++l + +++ +++l G+ sh04217 1189 VAVVQHAPSESvdnasmppvkVEFSLTDYGSKEKLVDFLSRGMTQLQGTR 1238 nNtgkALkyalenlfsstMikrnrsagsRpenapkvlillTDGksndggs + +g+A++y++en+f+s p + k+++l+ G+ + ++ sh04217 1239 A-LGSAIEYTIENVFES---------APNP-RDLKIVVLMLTGEVPEQQL 1277 ve.aaaalrdkkkgvgitvfavGvGgdvdeaeLr.iasepcseghvfyve +e + + l++k+kg+ ++v+++G +v+ +e + asep ++ +f++ sh04217 1278 EEaQRVILQAKCKGYFFVVLGIGR--KVNIKEVYtFASEP--NDVFFKLV 1323 dfdalwlqlqdiqeql<-* d++ + + ++++ sh04217 1324 DKSTEL----NEEPLM 1335 PF00092.18.ls: domain 4 of 4, from 1144 to 1335: score 105.9, E = 1.1e-28 *->DivFllDgSgSigeenlFekvkdFvkklveknld......igpdgtr D++F+lD+ + + + F+++k++++ lv+ +ld +++++ +++ r sh04217 1144 DMAFILDSAETTTLFQ-FNEMKKYIAYLVR-QLDmspdpkASQHFAR 1188 VglvqYssdvr..........tefsLndysskddllaavlknlrylgGgT V++vq + ++ + ++ ++efsL+dy sk++l + +++ +++l G+ sh04217 1189 VAVVQHAPSESvdnasmppvkVEFSLTDYGSKEKLVDFLSRGMTQLQGTR 1238 nNtgkALkyalenlfsstMikrnrsagsRpenapkvlillTDGksndggs + +g+A++y++en+f+s p + k+++l+ G+ + ++ sh04217 1239 A-LGSAIEYTIENVFES---------APNP-RDLKIVVLMLTGEVPEQQL 1277 ve.aaaalrdkkkgvgitvfavGvGgdvdeaeLr.iasepcseghvfyve +e + + l++k+kg+ ++v+++G +v+ +e + asep ++ +f++ sh04217 1278 EEaQRVILQAKCKGYFFVVLGIGR--KVNIKEVYtFASEP--NDVFFKLV 1323 dfdalwlqlqdiqeql<-* d++ + + ++++ sh04217 1324 DKSTEL----NEEPLM 1335 PF00014.13.fs: domain 1 of 1, from 1636 to 1688: score 103.4, E = 1.3e-35 *->iCslPpdsGpCkgsilpRyyYnpstgqCepFiYgGCgGNaNNFetle iC lP+d+G C+++i +++yY+p+t++C +F+YgGCgGN+N F +++ sh04217 1636 ICKLPKDEGTCRDFI-LKWYYDPNTKSCARFWYGGCGGNENKFGSQK 1681 eCertCg<-* eCe++C sh04217 1682 ECEKVCA 1688 PF00014.13.ls: domain 1 of 1, from 1636 to 1688: score 105.4, E = 1.6e-28 *->iCslPpdsGpCkgsilpRyyYnpstgqCepFiYgGCgGNaNNFetle iC lP+d+G C+++i +++yY+p+t++C +F+YgGCgGN+N F +++ sh04217 1636 ICKLPKDEGTCRDFI-LKWYYDPNTKSCARFWYGGCGGNENKFGSQK 1681 eCertCg<-* eCe++C sh04217 1682 ECEKVCA 1688 //