hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-17430977/chunk_1/iprscan-20080813-17430977.nocrc
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Query sequence: sh04217
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00327                                                 377.1   1.1e-108   5
SM00131                                                 103.9    1.8e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00327    1/5       1   132 [.     1   193 []    47.0  2.4e-09
SM00327    2/5     162   335 ..     1   193 []   138.0    1e-36
SM00327    3/5     361   550 ..     1   193 []    30.7   0.0002
SM00327    4/5     925  1104 ..     1   193 []    81.4  1.1e-19
SM00327    5/5    1142  1341 ..     1   193 []    79.9  3.1e-19
SM00131    1/1    1635  1688 ..     1    56 []   103.9  1.8e-26

Alignments of top-scoring domains:
SM00327: domain 1 of 5, from 1 to 132: score 47.0, E = 2.4e-09
                   *->plDvvfllDgSgSmggnrfekvkefvklveqldgdrvglvqFssdvr
                                                           g+vqFs+dv 
     sh04217     1    -------------------------------------GVVQFSNDVF 10   

                   vefpln.sqskdallealaslsykglkdyslgggTnlg.ALqyalenlfs
                    ef l++++s + +l+a+++l+       ++g + n+g+AL+++++nlf 
     sh04217    11 PEFYLKtYRSQAPVLDAIRRLRL------RGGSPLNTGkALEFVARNLFV 54   

                   esag.rrgagratkiSnvpkvliliTDGesndggddpedileaakelkrs
                   +sag+r+++g       vp++l+l+  G+s+d      d+++ a+  ++s
     sh04217    55 KSAGsRIEDG-------VPQHLVLVLGGKSQD------DVSRFAQVIRSS 91   

                   gvkvfvigvgna..de.elkeiasep.gehvffdvsdvedlpslldllid
                   g  ++++gvg+ + d++el++i+ +p+ ++          +++++++l +
     sh04217    92 G--IVSLGVGDRniDRtELQTITNDPrLVF----------TVREFRELPN 129  

                   lll<-*
                   + +   
     sh04217   130 IEE    132  

SM00327: domain 2 of 5, from 162 to 335: score 138.0, E = 1e-36
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld....gdrvglvqF
                      ++D+vfllDgS + +++ f++v++fv+++v++ ++++++++vglvq+
     sh04217   162    KADIVFLLDGSINFRRDSFQEVLRFVsEIVDTVYedgdSIQVGLVQY 208  

                   ssdvrvefpln.sqskdallealaslsykglkdyslgggTnlg.ALqyal
                   +sd+++ef l+++++k ++++a++++ y      ++g   n+  +L++ +
     sh04217   209 NSDPTDEFFLKdFSTKRQIIDAINKVVY------KGGRHANTKvGLEHLR 252  

                   enlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaak
                    n+f ++ag+r +        +vp++  +iT G+s        d+++++ 
     sh04217   253 VNHFVPEAGsRLDQ-------RVPQIAFVITGGKSVE------DAQDVSL 289  

                   elkrsgvkvfvigvgnade.elkeiasep.gehvffdvsdvedlpslldl
                   +l ++gvkvf++gv n d +e  +ias++   +           + ++++
     sh04217   290 ALTQRGVKVFAVGVRNIDSeEVGKIASNSaTAF----------RVGNVQE 329  

                   lidlll<-*
                   l++l++   
     sh04217   330 LSELSE    335  

SM00327: domain 3 of 5, from 361 to 550: score 30.7, E = 0.0002
                   *->plDvvfllDgSgSmg....gnrfekvkefv.klveqld.........
                       lDv++ +DgS+  +    +  fe+  +++ + ++q+ + + +++++
     sh04217   361    NLDVILGFDGSRDQNvfvaQKGFESKVDAIlNRISQMHrvscsggrs 407  

                   .gdrvglvqFss.dvrvefplnsqskdallealaslsykglkdyslgggT
                   +++rv++v+   +++ + f++      ++le+ ++++           + 
     sh04217   408 pTVRVSVVANTPsGPVEAFDF-DEYQPEMLEKFRNMRS-------QHPYV 449  

                   nlg.ALqyalenlfsesag.rrgagratkiSnvpkvliliTDGesndggd
                    + + L+  l++    ++ + ++           kv+i +TDG +     
     sh04217   450 LTEdTLKVYLNK----FRQsSPDS---------VKVVIHFTDGADG---- 482  

                   dpedileaakelkrsg.vkvfvigvgna.de.elkeiasep.gehvffdv
                   d+ d+ +a+++l+++g  +++ +g+ +  + + l  +    ++ + +  +
     sh04217   483 DLADLHRASENLRQEGvRALILVGLERVvNLeRLMHLEFGRgFMYDRPLR 532  

                   sdvedlpslldllidlll<-*
                    +  dl+ +l++++d++    
     sh04217   533 LNLLDLDYELAEQLDNIA    550  

SM00327: domain 4 of 5, from 925 to 1104: score 81.4, E = 1.1e-19
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld........gdrvg
                      p+ + f lD+S+++++++f +++++v ++v++l+  +++ ++g+rv+
     sh04217   925    PTELAFALDTSEGVNQDTFGRMRDVVlSIVNDLTiaesncprGARVA 971  

                   lvqFssdvrvefpln.sqskdallealaslsykglkdyslgggTnlg.AL
                   +v+++++v++e+ + +s++k+ ll+++++l+      + +++  +l +A+
     sh04217   972 VVTYNNEVTTEIRFAdSKRKSVLLDKIKNLQV-----ALTSKQQSLEtAM 1016 

                   qyalenlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedil
                   +++++n f++ +++  ++          kv ++++   +++   +  +++
     sh04217  1017 SFVARNTFKRVRNgFLMR----------KVAVFFS-NTPTR---ASPQLR 1052 

                   eaakelkrsgvkvfvigvgnade.elkeiasep.gehvffdvsdvedlps
                   ea+ +l ++g+++ ++     d++ ++++  +++ +++         +  
     sh04217  1053 EAVLKLSDAGITPLFLTRQE-DRqLINALQINNtAVGHAL-------VLP 1094 

                   lldllidlll<-*
                   + ++l+d+l+   
     sh04217  1095 AGRDLTDFLE    1104 

SM00327: domain 5 of 5, from 1142 to 1341: score 79.9, E = 3.1e-19
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld..........gdr
                      + D  f+lD+ +  +   f+++k+ +  lv+qld +++++ +++ +r
     sh04217  1142    DIDMAFILDSAETTTLFQFNEMKKYIaYLVRQLDmspdpkasqhFAR 1188 

                   vglvqFss..........dvrvefpln.sqskdallealaslsykglkdy
                   v++vq + +++ ++ + + v+vef+l+++ sk++l++ l +         
     sh04217  1189 VAVVQHAPsesvdnasmpPVKVEFSLTdYGSKEKLVDFLSRGMT------ 1232 

                   slgggTnlg.ALqyalenlfsesag.rrgagratkiSnvpkvliliTDGe
                   +l g   lg+A++y +en+f+++ ++r             k+++l+  Ge
     sh04217  1233 QLQGTRALGsAIEYTIENVFESAPNpRD-----------LKIVVLMLTGE 1271 

                   sndggddpedileaakelkrsgvkvfvigvgna.de.elkeiasep.geh
                        + +e++++++  +k +g+  +v+g+g+  + +e  ++asep+ ++
     sh04217  1272 VPE--QQLEEAQRVILQAKCKGYFFVVLGIGRKvNIkEVYTFASEPnDVF 1319 

                   vffdvsdvedlpslldllidlll<-*
                   +   v++ ++l+++    + +ll   
     sh04217  1320 FKL-VDKSTELNEEPLMRFGRLL    1341 

SM00131: domain 1 of 1, from 1635 to 1688: score 103.9, E = 1.8e-26
                   *->dvCslpgpdtGptCg.sipRyyYdpetgkCepFtYgGaCgGNaNNFe
                      d+C lp +d+G+ C+++i ++yYdp t++C +F+YgG CgGN+N F 
     sh04217  1635    DICKLP-KDEGT-CRdFILKWYYDPNTKSCARFWYGG-CGGNENKFG 1678 

                   tkeeCertCg<-*
                   +++eCe+ C    
     sh04217  1679 SQKECEKVCA    1688 

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