# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osh04217.fasta.nr -Q sh04217.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sh04217, 1702 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6809539 sequences Expectation_n fit: rho(ln(x))= 6.3119+/-0.000212; mu= 11.6080+/- 0.012 mean_var=167.4584+/-31.991, 0's: 39 Z-trim: 179 B-trim: 0 in 0/65 Lambda= 0.099111 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088852|dbj|BAD92873.1| alpha 3 type VI collag (1702) 11477 1655.0 0 gi|119591511|gb|EAW71105.1| collagen, type VI, alp (2971) 11471 1654.4 0 gi|119591516|gb|EAW71110.1| collagen, type VI, alp (2977) 11471 1654.4 0 gi|119591513|gb|EAW71107.1| collagen, type VI, alp (3177) 11471 1654.5 0 gi|55743106|ref|NP_476508.2| alpha 3 type VI colla (2971) 11454 1652.0 0 gi|55743104|ref|NP_476507.2| alpha 3 type VI colla (2976) 11454 1652.0 0 gi|55743102|ref|NP_476506.2| alpha 3 type VI colla (2977) 11454 1652.0 0 gi|55743098|ref|NP_004360.2| alpha 3 type VI colla (3177) 11454 1652.0 0 gi|114584071|ref|XP_001153479.1| PREDICTED: alpha (2971) 11438 1649.7 0 gi|114584075|ref|XP_516178.2| PREDICTED: alpha 3 t (2976) 11438 1649.7 0 gi|114584073|ref|XP_001153410.1| PREDICTED: alpha (2977) 11438 1649.7 0 gi|114584069|ref|XP_001153544.1| PREDICTED: alpha (3177) 11438 1649.7 0 gi|5921193|sp|P12111.3|CO6A3_HUMAN Collagen alpha- (3176) 11390 1642.9 0 gi|109101588|ref|XP_001084624.1| PREDICTED: simila (2969) 11088 1599.7 0 gi|109101594|ref|XP_001084378.1| PREDICTED: simila (2983) 11088 1599.7 0 gi|109101592|ref|XP_001084258.1| PREDICTED: simila (2984) 11088 1599.7 0 gi|109101590|ref|XP_001084500.1| PREDICTED: simila (3184) 11088 1599.7 0 gi|55743100|ref|NP_476505.2| alpha 3 type VI colla (3010) 10693 1543.2 0 gi|114584077|ref|XP_001153230.1| PREDICTED: alpha (3010) 10677 1540.9 0 gi|109101596|ref|XP_001084148.1| PREDICTED: simila (3017) 10335 1492.0 0 gi|194043712|ref|XP_001928130.1| PREDICTED: collag (2972) 10099 1458.2 0 gi|194043716|ref|XP_001928143.1| PREDICTED: collag (2977) 10099 1458.2 0 gi|194043714|ref|XP_001928138.1| PREDICTED: collag (2978) 10099 1458.2 0 gi|194043710|ref|XP_001928122.1| PREDICTED: collag (3178) 10099 1458.3 0 gi|157151714|ref|NP_001096685.1| collagen, type VI (3169) 9900 1429.8 0 gi|194043718|ref|XP_001928148.1| PREDICTED: collag (3011) 9387 1356.4 0 gi|194211467|ref|XP_001916467.1| PREDICTED: simila (3165) 8887 1285.0 0 gi|148708135|gb|EDL40082.1| mCG12867, isoform CRA_ (2656) 8854 1280.2 0 gi|148708136|gb|EDL40083.1| mCG12867, isoform CRA_ (3261) 8828 1276.6 0 gi|3236370|gb|AAC23667.1| type VI collagen alpha 3 (2657) 8779 1269.4 0 gi|119890645|ref|XP_609132.3| PREDICTED: similar t (1734) 8765 1267.2 0 gi|149037630|gb|EDL92061.1| procollagen, type VI, (2867) 8449 1222.3 0 gi|149037634|gb|EDL92065.1| procollagen, type VI, (2254) 8436 1220.3 0 gi|149037631|gb|EDL92062.1| procollagen, type VI, (2862) 8436 1220.4 0 gi|62988748|gb|AAY24135.1| unknown [Homo sapiens] (2588) 7564 1095.7 0 gi|148708139|gb|EDL40086.1| mCG12867, isoform CRA_ (2555) 6701 972.3 0 gi|21620053|gb|AAH33174.1| Similar to collagen, ty ( 979) 6587 955.5 0 gi|1345652|sp|P15989|CO6A3_CHICK Collagen alpha-3( (3137) 6449 936.4 0 gi|126314598|ref|XP_001371349.1| PREDICTED: simila (3274) 6415 931.5 0 gi|119591515|gb|EAW71109.1| collagen, type VI, alp (2205) 6279 911.9 0 gi|119591510|gb|EAW71104.1| collagen, type VI, alp (2210) 6279 911.9 0 gi|119591509|gb|EAW71103.1| collagen, type VI, alp (2211) 6279 911.9 0 gi|119591512|gb|EAW71106.1| collagen, type VI, alp (2411) 6279 911.9 0 gi|57960|emb|CAA79156.1| collagen alpha 3 chain ty ( 959) 5974 867.8 0 gi|119591514|gb|EAW71108.1| collagen, type VI, alp (2244) 5518 803.1 0 gi|148708137|gb|EDL40084.1| mCG12867, isoform CRA_ (2207) 4425 646.8 5.1e-182 gi|149037629|gb|EDL92060.1| procollagen, type VI, (2207) 4353 636.5 6.4e-179 gi|148708138|gb|EDL40085.1| mCG12867, isoform CRA_ (2281) 4005 586.7 6.3e-164 gi|149037632|gb|EDL92063.1| procollagen, type VI, (2140) 3966 581.1 2.9e-162 gi|62822357|gb|AAY14906.1| unknown [Homo sapiens] ( 588) 3882 568.4 5.3e-159 >>gi|62088852|dbj|BAD92873.1| alpha 3 type VI collagen i (1702 aa) initn: 11477 init1: 11477 opt: 11477 Z-score: 8873.7 bits: 1655.0 E(): 0 Smith-Waterman score: 11477; 100.000% identity (100.000% similar) in 1702 aa overlap (1-1702:1-1702) 10 20 30 40 50 60 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRRLRLRGGSPLNTGKALEFVARNLFVKSAGSR 10 20 30 40 50 60 70 80 90 100 110 120 sh0421 IEDGVPQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 IEDGVPQHLVLVLGGKSQDDVSRFAQVIRSSGIVSLGVGDRNIDRTELQTITNDPRLVFT 70 80 90 100 110 120 130 140 150 160 170 180 sh0421 VREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VREFRELPNIEERIMNSFGPSAATPAPPGVDTPPPSRPEKKKADIVFLLDGSINFRRDSF 130 140 150 160 170 180 190 200 210 220 230 240 sh0421 QEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QEVLRFVSEIVDTVYEDGDSIQVGLVQYNSDPTDEFFLKDFSTKRQIIDAINKVVYKGGR 190 200 210 220 230 240 250 260 270 280 290 300 sh0421 HANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HANTKVGLEHLRVNHFVPEAGSRLDQRVPQIAFVITGGKSVEDAQDVSLALTQRGVKVFA 250 260 270 280 290 300 310 320 330 340 350 360 sh0421 VGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VGVRNIDSEEVGKIASNSATAFRVGNVQELSELSEQVLETLHDAMHETLCPGVTDAAKAC 310 320 330 340 350 360 370 380 390 400 410 420 sh0421 NLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NLDVILGFDGSRDQNVFVAQKGFESKVDAILNRISQMHRVSCSGGRSPTVRVSVVANTPS 370 380 390 400 410 420 430 440 450 460 470 480 sh0421 GPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GPVEAFDFDEYQPEMLEKFRNMRSQHPYVLTEDTLKVYLNKFRQSSPDSVKVVIHFTDGA 430 440 450 460 470 480 490 500 510 520 530 540 sh0421 DGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DGDLADLHRASENLRQEGVRALILVGLERVVNLERLMHLEFGRGFMYDRPLRLNLLDLDY 490 500 510 520 530 540 550 560 570 580 590 600 sh0421 ELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ELAEQLDNIAEKACCGVPCKCSGQRGDRGPIGSIGPKGIPGEDGYRGYPGDEGGPGERGP 550 560 570 580 590 600 610 620 630 640 650 660 sh0421 PGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PGVNGTQGFQGCPGQRGVKGSRGFPGEKGEVGEIGLDGLDGEDGDKGLPGSSGEKGNPGR 610 620 630 640 650 660 670 680 690 700 710 720 sh0421 RGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RGDKGPRGEKGERGDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGETG 670 680 690 700 710 720 730 740 750 760 770 780 sh0421 KNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQGISGPRGSGG 730 740 750 760 770 780 790 800 810 820 830 840 sh0421 AAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDGVGSEGRRGKKGERGF 790 800 810 820 830 840 850 860 870 880 890 900 sh0421 PGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYPGPAGPKGNRGDSID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYPGPAGPKGNRGDSID 850 860 870 880 890 900 910 920 930 940 950 960 sh0421 QCALIQSIKDKCPCCYGPLECPVFPTELAFALDTSEGVNQDTFGRMRDVVLSIVNDLTIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QCALIQSIKDKCPCCYGPLECPVFPTELAFALDTSEGVNQDTFGRMRDVVLSIVNDLTIA 910 920 930 940 950 960 970 980 990 1000 1010 1020 sh0421 ESNCPRGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ESNCPRGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIKNLQVALTSKQQSLETAMSFVA 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 sh0421 RNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLKLSDAGITPLFLTRQEDRQLINAL 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 sh0421 QINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSD 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 sh0421 VDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQLDMSPDPKASQHFARVAVVQHAPSESV 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 sh0421 DNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DNASMPPVKVEFSLTDYGSKEKLVDFLSRGMTQLQGTRALGSAIEYTIENVFESAPNPRD 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 sh0421 LKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LKIVVLMLTGEVPEQQLEEAQRVILQAKCKGYFFVVLGIGRKVNIKEVYTFASEPNDVFF 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 sh0421 KLVDKSTELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KLVDKSTELNEEPLMRFGRLLPSFVSSENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQ 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 sh0421 VNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPA 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 sh0421 KPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPAAVRPPAAAAAKPVATKPEVPRPQAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KPVAAKPVATKTATVRPPVAVKPATAAKPVAAKPAAVRPPAAAAAKPVATKPEVPRPQAA 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 sh0421 KPAATKPATTKPMVKMSREVQVFEITENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KPAATKPATTKPMVKMSREVQVFEITENSAKLHWERPEPPGPYFYDLTVTSAHDQSLVLK 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 sh0421 QNLTVTDRVIGGLLAGQTYHVAVVCYLRSQVRAIYHGSFSTKKSQPPPPQPARSASSSTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QNLTVTDRVIGGLLAGQTYHVAVVCYLRSQVRAIYHGSFSTKKSQPPPPQPARSASSSTI 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 sh0421 NLMVSTEPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NLMVSTEPLALTETDICKLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQ 1630 1640 1650 1660 1670 1680 1690 1700 sh0421 KECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::: gi|620 KECEKVCAPVLAKPGVISVMGT 1690 1700 >>gi|119591511|gb|EAW71105.1| collagen, type VI, alpha 3 (2971 aa) initn: 11471 init1: 11471 opt: 11471 Z-score: 8866.4 bits: 1654.4 E(): 0 Smith-Waterman score: 11471; 99.941% identity (99.941% similar) in 1702 aa overlap (1-1702:1270-2971) 10 20 30 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRR :::::::::::::::::::::::::::::: gi|119 GVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1240 1250 1260 1270 1280 1290 40 50 60 70 80 90 sh0421 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS 1300 1310 1320 1330 1340 1350 100 110 120 130 140 150 sh0421 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV 1360 1370 1380 1390 1400 1410 160 170 180 190 200 210 sh0421 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS 1420 1430 1440 1450 1460 1470 220 230 240 250 260 270 sh0421 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ 1480 1490 1500 1510 1520 1530 280 290 300 310 320 330 sh0421 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL 1540 1550 1560 1570 1580 1590 340 350 360 370 380 390 sh0421 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI 1600 1610 1620 1630 1640 1650 400 410 420 430 440 450 sh0421 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL 1660 1670 1680 1690 1700 1710 460 470 480 490 500 510 sh0421 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV 1720 1730 1740 1750 1760 1770 520 530 540 550 560 570 sh0421 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP 1780 1790 1800 1810 1820 1830 580 590 600 610 620 630 sh0421 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE 1840 1850 1860 1870 1880 1890 640 650 660 670 680 690 sh0421 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ 1900 1910 1920 1930 1940 1950 700 710 720 730 740 750 sh0421 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG 1960 1970 1980 1990 2000 2010 760 770 780 790 800 810 sh0421 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG 2020 2030 2040 2050 2060 2070 820 830 840 850 860 870 sh0421 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN 2080 2090 2100 2110 2120 2130 880 890 900 910 920 930 sh0421 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF 2140 2150 2160 2170 2180 2190 940 950 960 970 980 990 sh0421 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR 2200 2210 2220 2230 2240 2250 1000 1010 1020 1030 1040 1050 sh0421 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ 2260 2270 2280 2290 2300 2310 1060 1070 1080 1090 1100 1110 sh0421 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH 2320 2330 2340 2350 2360 2370 1120 1130 1140 1150 1160 1170 sh0421 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL 2380 2390 2400 2410 2420 2430 1180 1190 1200 1210 1220 1230 sh0421 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG 2440 2450 2460 2470 2480 2490 1240 1250 1260 1270 1280 1290 sh0421 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK 2500 2510 2520 2530 2540 2550 1300 1310 1320 1330 1340 1350 sh0421 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA 2560 2570 2580 2590 2600 2610 1360 1370 1380 1390 1400 1410 sh0421 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT 2620 2630 2640 2650 2660 2670 1420 1430 1440 1450 1460 1470 sh0421 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV 2680 2690 2700 2710 2720 2730 1480 1490 1500 1510 1520 1530 sh0421 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA 2740 2750 2760 2770 2780 2790 1540 1550 1560 1570 1580 1590 sh0421 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ 2800 2810 2820 2830 2840 2850 1600 1610 1620 1630 1640 1650 sh0421 VRAIYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI 2860 2870 2880 2890 2900 2910 1660 1670 1680 1690 1700 sh0421 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 2920 2930 2940 2950 2960 2970 >>gi|119591516|gb|EAW71110.1| collagen, type VI, alpha 3 (2977 aa) initn: 11471 init1: 11471 opt: 11471 Z-score: 8866.4 bits: 1654.4 E(): 0 Smith-Waterman score: 11471; 99.941% identity (99.941% similar) in 1702 aa overlap (1-1702:1276-2977) 10 20 30 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRR :::::::::::::::::::::::::::::: gi|119 GVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1250 1260 1270 1280 1290 1300 40 50 60 70 80 90 sh0421 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS 1310 1320 1330 1340 1350 1360 100 110 120 130 140 150 sh0421 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV 1370 1380 1390 1400 1410 1420 160 170 180 190 200 210 sh0421 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS 1430 1440 1450 1460 1470 1480 220 230 240 250 260 270 sh0421 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ 1490 1500 1510 1520 1530 1540 280 290 300 310 320 330 sh0421 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL 1550 1560 1570 1580 1590 1600 340 350 360 370 380 390 sh0421 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI 1610 1620 1630 1640 1650 1660 400 410 420 430 440 450 sh0421 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL 1670 1680 1690 1700 1710 1720 460 470 480 490 500 510 sh0421 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV 1730 1740 1750 1760 1770 1780 520 530 540 550 560 570 sh0421 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP 1790 1800 1810 1820 1830 1840 580 590 600 610 620 630 sh0421 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE 1850 1860 1870 1880 1890 1900 640 650 660 670 680 690 sh0421 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ 1910 1920 1930 1940 1950 1960 700 710 720 730 740 750 sh0421 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG 1970 1980 1990 2000 2010 2020 760 770 780 790 800 810 sh0421 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG 2030 2040 2050 2060 2070 2080 820 830 840 850 860 870 sh0421 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN 2090 2100 2110 2120 2130 2140 880 890 900 910 920 930 sh0421 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF 2150 2160 2170 2180 2190 2200 940 950 960 970 980 990 sh0421 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR 2210 2220 2230 2240 2250 2260 1000 1010 1020 1030 1040 1050 sh0421 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ 2270 2280 2290 2300 2310 2320 1060 1070 1080 1090 1100 1110 sh0421 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH 2330 2340 2350 2360 2370 2380 1120 1130 1140 1150 1160 1170 sh0421 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL 2390 2400 2410 2420 2430 2440 1180 1190 1200 1210 1220 1230 sh0421 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG 2450 2460 2470 2480 2490 2500 1240 1250 1260 1270 1280 1290 sh0421 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK 2510 2520 2530 2540 2550 2560 1300 1310 1320 1330 1340 1350 sh0421 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA 2570 2580 2590 2600 2610 2620 1360 1370 1380 1390 1400 1410 sh0421 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT 2630 2640 2650 2660 2670 2680 1420 1430 1440 1450 1460 1470 sh0421 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV 2690 2700 2710 2720 2730 2740 1480 1490 1500 1510 1520 1530 sh0421 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA 2750 2760 2770 2780 2790 2800 1540 1550 1560 1570 1580 1590 sh0421 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ 2810 2820 2830 2840 2850 2860 1600 1610 1620 1630 1640 1650 sh0421 VRAIYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI 2870 2880 2890 2900 2910 2920 1660 1670 1680 1690 1700 sh0421 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 2930 2940 2950 2960 2970 >>gi|119591513|gb|EAW71107.1| collagen, type VI, alpha 3 (3177 aa) initn: 11471 init1: 11471 opt: 11471 Z-score: 8866.1 bits: 1654.5 E(): 0 Smith-Waterman score: 11471; 99.941% identity (99.941% similar) in 1702 aa overlap (1-1702:1476-3177) 10 20 30 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRR :::::::::::::::::::::::::::::: gi|119 GVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1450 1460 1470 1480 1490 1500 40 50 60 70 80 90 sh0421 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS 1510 1520 1530 1540 1550 1560 100 110 120 130 140 150 sh0421 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV 1570 1580 1590 1600 1610 1620 160 170 180 190 200 210 sh0421 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS 1630 1640 1650 1660 1670 1680 220 230 240 250 260 270 sh0421 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ 1690 1700 1710 1720 1730 1740 280 290 300 310 320 330 sh0421 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL 1750 1760 1770 1780 1790 1800 340 350 360 370 380 390 sh0421 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI 1810 1820 1830 1840 1850 1860 400 410 420 430 440 450 sh0421 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL 1870 1880 1890 1900 1910 1920 460 470 480 490 500 510 sh0421 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV 1930 1940 1950 1960 1970 1980 520 530 540 550 560 570 sh0421 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP 1990 2000 2010 2020 2030 2040 580 590 600 610 620 630 sh0421 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE 2050 2060 2070 2080 2090 2100 640 650 660 670 680 690 sh0421 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ 2110 2120 2130 2140 2150 2160 700 710 720 730 740 750 sh0421 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG 2170 2180 2190 2200 2210 2220 760 770 780 790 800 810 sh0421 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG 2230 2240 2250 2260 2270 2280 820 830 840 850 860 870 sh0421 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN 2290 2300 2310 2320 2330 2340 880 890 900 910 920 930 sh0421 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF 2350 2360 2370 2380 2390 2400 940 950 960 970 980 990 sh0421 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR 2410 2420 2430 2440 2450 2460 1000 1010 1020 1030 1040 1050 sh0421 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ 2470 2480 2490 2500 2510 2520 1060 1070 1080 1090 1100 1110 sh0421 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH 2530 2540 2550 2560 2570 2580 1120 1130 1140 1150 1160 1170 sh0421 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL 2590 2600 2610 2620 2630 2640 1180 1190 1200 1210 1220 1230 sh0421 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG 2650 2660 2670 2680 2690 2700 1240 1250 1260 1270 1280 1290 sh0421 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK 2710 2720 2730 2740 2750 2760 1300 1310 1320 1330 1340 1350 sh0421 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA 2770 2780 2790 2800 2810 2820 1360 1370 1380 1390 1400 1410 sh0421 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT 2830 2840 2850 2860 2870 2880 1420 1430 1440 1450 1460 1470 sh0421 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV 2890 2900 2910 2920 2930 2940 1480 1490 1500 1510 1520 1530 sh0421 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA 2950 2960 2970 2980 2990 3000 1540 1550 1560 1570 1580 1590 sh0421 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ 3010 3020 3030 3040 3050 3060 1600 1610 1620 1630 1640 1650 sh0421 VRAIYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI 3070 3080 3090 3100 3110 3120 1660 1670 1680 1690 1700 sh0421 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 3130 3140 3150 3160 3170 >>gi|55743106|ref|NP_476508.2| alpha 3 type VI collagen (2971 aa) initn: 11454 init1: 11454 opt: 11454 Z-score: 8853.3 bits: 1652.0 E(): 0 Smith-Waterman score: 11454; 99.824% identity (99.824% similar) in 1702 aa overlap (1-1702:1270-2971) 10 20 30 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRR :::::::::::::::::::::::::::::: gi|557 GVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1240 1250 1260 1270 1280 1290 40 50 60 70 80 90 sh0421 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS 1300 1310 1320 1330 1340 1350 100 110 120 130 140 150 sh0421 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV 1360 1370 1380 1390 1400 1410 160 170 180 190 200 210 sh0421 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS 1420 1430 1440 1450 1460 1470 220 230 240 250 260 270 sh0421 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ 1480 1490 1500 1510 1520 1530 280 290 300 310 320 330 sh0421 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL 1540 1550 1560 1570 1580 1590 340 350 360 370 380 390 sh0421 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI 1600 1610 1620 1630 1640 1650 400 410 420 430 440 450 sh0421 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL 1660 1670 1680 1690 1700 1710 460 470 480 490 500 510 sh0421 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV 1720 1730 1740 1750 1760 1770 520 530 540 550 560 570 sh0421 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP 1780 1790 1800 1810 1820 1830 580 590 600 610 620 630 sh0421 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE 1840 1850 1860 1870 1880 1890 640 650 660 670 680 690 sh0421 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ 1900 1910 1920 1930 1940 1950 700 710 720 730 740 750 sh0421 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG 1960 1970 1980 1990 2000 2010 760 770 780 790 800 810 sh0421 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG 2020 2030 2040 2050 2060 2070 820 830 840 850 860 870 sh0421 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN 2080 2090 2100 2110 2120 2130 880 890 900 910 920 930 sh0421 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF 2140 2150 2160 2170 2180 2190 940 950 960 970 980 990 sh0421 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR 2200 2210 2220 2230 2240 2250 1000 1010 1020 1030 1040 1050 sh0421 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ 2260 2270 2280 2290 2300 2310 1060 1070 1080 1090 1100 1110 sh0421 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH 2320 2330 2340 2350 2360 2370 1120 1130 1140 1150 1160 1170 sh0421 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL 2380 2390 2400 2410 2420 2430 1180 1190 1200 1210 1220 1230 sh0421 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG 2440 2450 2460 2470 2480 2490 1240 1250 1260 1270 1280 1290 sh0421 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK 2500 2510 2520 2530 2540 2550 1300 1310 1320 1330 1340 1350 sh0421 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA 2560 2570 2580 2590 2600 2610 1360 1370 1380 1390 1400 1410 sh0421 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT 2620 2630 2640 2650 2660 2670 1420 1430 1440 1450 1460 1470 sh0421 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|557 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPV 2680 2690 2700 2710 2720 2730 1480 1490 1500 1510 1520 1530 sh0421 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA 2740 2750 2760 2770 2780 2790 1540 1550 1560 1570 1580 1590 sh0421 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ 2800 2810 2820 2830 2840 2850 1600 1610 1620 1630 1640 1650 sh0421 VRAIYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI 2860 2870 2880 2890 2900 2910 1660 1670 1680 1690 1700 sh0421 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 2920 2930 2940 2950 2960 2970 >>gi|55743104|ref|NP_476507.2| alpha 3 type VI collagen (2976 aa) initn: 11454 init1: 11454 opt: 11454 Z-score: 8853.2 bits: 1652.0 E(): 0 Smith-Waterman score: 11454; 99.824% identity (99.824% similar) in 1702 aa overlap (1-1702:1275-2976) 10 20 30 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRR :::::::::::::::::::::::::::::: gi|557 GVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1250 1260 1270 1280 1290 1300 40 50 60 70 80 90 sh0421 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS 1310 1320 1330 1340 1350 1360 100 110 120 130 140 150 sh0421 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV 1370 1380 1390 1400 1410 1420 160 170 180 190 200 210 sh0421 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS 1430 1440 1450 1460 1470 1480 220 230 240 250 260 270 sh0421 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ 1490 1500 1510 1520 1530 1540 280 290 300 310 320 330 sh0421 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL 1550 1560 1570 1580 1590 1600 340 350 360 370 380 390 sh0421 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI 1610 1620 1630 1640 1650 1660 400 410 420 430 440 450 sh0421 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL 1670 1680 1690 1700 1710 1720 460 470 480 490 500 510 sh0421 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV 1730 1740 1750 1760 1770 1780 520 530 540 550 560 570 sh0421 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP 1790 1800 1810 1820 1830 1840 580 590 600 610 620 630 sh0421 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE 1850 1860 1870 1880 1890 1900 640 650 660 670 680 690 sh0421 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ 1910 1920 1930 1940 1950 1960 700 710 720 730 740 750 sh0421 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG 1970 1980 1990 2000 2010 2020 760 770 780 790 800 810 sh0421 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG 2030 2040 2050 2060 2070 2080 820 830 840 850 860 870 sh0421 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN 2090 2100 2110 2120 2130 2140 880 890 900 910 920 930 sh0421 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF 2150 2160 2170 2180 2190 2200 940 950 960 970 980 990 sh0421 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR 2210 2220 2230 2240 2250 2260 1000 1010 1020 1030 1040 1050 sh0421 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ 2270 2280 2290 2300 2310 2320 1060 1070 1080 1090 1100 1110 sh0421 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH 2330 2340 2350 2360 2370 2380 1120 1130 1140 1150 1160 1170 sh0421 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL 2390 2400 2410 2420 2430 2440 1180 1190 1200 1210 1220 1230 sh0421 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG 2450 2460 2470 2480 2490 2500 1240 1250 1260 1270 1280 1290 sh0421 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK 2510 2520 2530 2540 2550 2560 1300 1310 1320 1330 1340 1350 sh0421 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA 2570 2580 2590 2600 2610 2620 1360 1370 1380 1390 1400 1410 sh0421 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT 2630 2640 2650 2660 2670 2680 1420 1430 1440 1450 1460 1470 sh0421 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|557 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPV 2690 2700 2710 2720 2730 2740 1480 1490 1500 1510 1520 1530 sh0421 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA 2750 2760 2770 2780 2790 2800 1540 1550 1560 1570 1580 1590 sh0421 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ 2810 2820 2830 2840 2850 2860 1600 1610 1620 1630 1640 1650 sh0421 VRAIYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI 2870 2880 2890 2900 2910 2920 1660 1670 1680 1690 1700 sh0421 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 2930 2940 2950 2960 2970 >>gi|55743102|ref|NP_476506.2| alpha 3 type VI collagen (2977 aa) initn: 11454 init1: 11454 opt: 11454 Z-score: 8853.2 bits: 1652.0 E(): 0 Smith-Waterman score: 11454; 99.824% identity (99.824% similar) in 1702 aa overlap (1-1702:1276-2977) 10 20 30 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRR :::::::::::::::::::::::::::::: gi|557 GVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1250 1260 1270 1280 1290 1300 40 50 60 70 80 90 sh0421 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS 1310 1320 1330 1340 1350 1360 100 110 120 130 140 150 sh0421 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV 1370 1380 1390 1400 1410 1420 160 170 180 190 200 210 sh0421 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS 1430 1440 1450 1460 1470 1480 220 230 240 250 260 270 sh0421 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ 1490 1500 1510 1520 1530 1540 280 290 300 310 320 330 sh0421 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL 1550 1560 1570 1580 1590 1600 340 350 360 370 380 390 sh0421 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI 1610 1620 1630 1640 1650 1660 400 410 420 430 440 450 sh0421 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL 1670 1680 1690 1700 1710 1720 460 470 480 490 500 510 sh0421 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV 1730 1740 1750 1760 1770 1780 520 530 540 550 560 570 sh0421 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP 1790 1800 1810 1820 1830 1840 580 590 600 610 620 630 sh0421 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE 1850 1860 1870 1880 1890 1900 640 650 660 670 680 690 sh0421 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ 1910 1920 1930 1940 1950 1960 700 710 720 730 740 750 sh0421 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG 1970 1980 1990 2000 2010 2020 760 770 780 790 800 810 sh0421 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG 2030 2040 2050 2060 2070 2080 820 830 840 850 860 870 sh0421 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN 2090 2100 2110 2120 2130 2140 880 890 900 910 920 930 sh0421 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF 2150 2160 2170 2180 2190 2200 940 950 960 970 980 990 sh0421 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR 2210 2220 2230 2240 2250 2260 1000 1010 1020 1030 1040 1050 sh0421 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ 2270 2280 2290 2300 2310 2320 1060 1070 1080 1090 1100 1110 sh0421 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH 2330 2340 2350 2360 2370 2380 1120 1130 1140 1150 1160 1170 sh0421 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL 2390 2400 2410 2420 2430 2440 1180 1190 1200 1210 1220 1230 sh0421 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG 2450 2460 2470 2480 2490 2500 1240 1250 1260 1270 1280 1290 sh0421 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK 2510 2520 2530 2540 2550 2560 1300 1310 1320 1330 1340 1350 sh0421 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA 2570 2580 2590 2600 2610 2620 1360 1370 1380 1390 1400 1410 sh0421 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT 2630 2640 2650 2660 2670 2680 1420 1430 1440 1450 1460 1470 sh0421 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|557 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPV 2690 2700 2710 2720 2730 2740 1480 1490 1500 1510 1520 1530 sh0421 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA 2750 2760 2770 2780 2790 2800 1540 1550 1560 1570 1580 1590 sh0421 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ 2810 2820 2830 2840 2850 2860 1600 1610 1620 1630 1640 1650 sh0421 VRAIYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI 2870 2880 2890 2900 2910 2920 1660 1670 1680 1690 1700 sh0421 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 2930 2940 2950 2960 2970 >>gi|55743098|ref|NP_004360.2| alpha 3 type VI collagen (3177 aa) initn: 11454 init1: 11454 opt: 11454 Z-score: 8852.9 bits: 1652.0 E(): 0 Smith-Waterman score: 11454; 99.824% identity (99.824% similar) in 1702 aa overlap (1-1702:1476-3177) 10 20 30 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRR :::::::::::::::::::::::::::::: gi|557 GVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1450 1460 1470 1480 1490 1500 40 50 60 70 80 90 sh0421 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS 1510 1520 1530 1540 1550 1560 100 110 120 130 140 150 sh0421 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV 1570 1580 1590 1600 1610 1620 160 170 180 190 200 210 sh0421 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS 1630 1640 1650 1660 1670 1680 220 230 240 250 260 270 sh0421 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ 1690 1700 1710 1720 1730 1740 280 290 300 310 320 330 sh0421 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL 1750 1760 1770 1780 1790 1800 340 350 360 370 380 390 sh0421 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI 1810 1820 1830 1840 1850 1860 400 410 420 430 440 450 sh0421 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL 1870 1880 1890 1900 1910 1920 460 470 480 490 500 510 sh0421 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV 1930 1940 1950 1960 1970 1980 520 530 540 550 560 570 sh0421 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP 1990 2000 2010 2020 2030 2040 580 590 600 610 620 630 sh0421 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE 2050 2060 2070 2080 2090 2100 640 650 660 670 680 690 sh0421 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ 2110 2120 2130 2140 2150 2160 700 710 720 730 740 750 sh0421 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG 2170 2180 2190 2200 2210 2220 760 770 780 790 800 810 sh0421 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG 2230 2240 2250 2260 2270 2280 820 830 840 850 860 870 sh0421 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN 2290 2300 2310 2320 2330 2340 880 890 900 910 920 930 sh0421 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF 2350 2360 2370 2380 2390 2400 940 950 960 970 980 990 sh0421 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR 2410 2420 2430 2440 2450 2460 1000 1010 1020 1030 1040 1050 sh0421 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ 2470 2480 2490 2500 2510 2520 1060 1070 1080 1090 1100 1110 sh0421 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH 2530 2540 2550 2560 2570 2580 1120 1130 1140 1150 1160 1170 sh0421 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL 2590 2600 2610 2620 2630 2640 1180 1190 1200 1210 1220 1230 sh0421 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG 2650 2660 2670 2680 2690 2700 1240 1250 1260 1270 1280 1290 sh0421 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK 2710 2720 2730 2740 2750 2760 1300 1310 1320 1330 1340 1350 sh0421 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA 2770 2780 2790 2800 2810 2820 1360 1370 1380 1390 1400 1410 sh0421 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT 2830 2840 2850 2860 2870 2880 1420 1430 1440 1450 1460 1470 sh0421 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|557 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPV 2890 2900 2910 2920 2930 2940 1480 1490 1500 1510 1520 1530 sh0421 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA 2950 2960 2970 2980 2990 3000 1540 1550 1560 1570 1580 1590 sh0421 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ 3010 3020 3030 3040 3050 3060 1600 1610 1620 1630 1640 1650 sh0421 VRAIYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 VRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI 3070 3080 3090 3100 3110 3120 1660 1670 1680 1690 1700 sh0421 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 3130 3140 3150 3160 3170 >>gi|114584071|ref|XP_001153479.1| PREDICTED: alpha 3 ty (2971 aa) initn: 11438 init1: 11438 opt: 11438 Z-score: 8840.9 bits: 1649.7 E(): 0 Smith-Waterman score: 11438; 99.530% identity (99.765% similar) in 1702 aa overlap (1-1702:1270-2971) 10 20 30 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRR :::::::::::::::::::::::::::::: gi|114 GVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1240 1250 1260 1270 1280 1290 40 50 60 70 80 90 sh0421 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS 1300 1310 1320 1330 1340 1350 100 110 120 130 140 150 sh0421 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV 1360 1370 1380 1390 1400 1410 160 170 180 190 200 210 sh0421 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS 1420 1430 1440 1450 1460 1470 220 230 240 250 260 270 sh0421 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ 1480 1490 1500 1510 1520 1530 280 290 300 310 320 330 sh0421 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL 1540 1550 1560 1570 1580 1590 340 350 360 370 380 390 sh0421 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI 1600 1610 1620 1630 1640 1650 400 410 420 430 440 450 sh0421 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL 1660 1670 1680 1690 1700 1710 460 470 480 490 500 510 sh0421 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV 1720 1730 1740 1750 1760 1770 520 530 540 550 560 570 sh0421 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ANLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP 1780 1790 1800 1810 1820 1830 580 590 600 610 620 630 sh0421 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IGSIGPKGTPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE 1840 1850 1860 1870 1880 1890 640 650 660 670 680 690 sh0421 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ 1900 1910 1920 1930 1940 1950 700 710 720 730 740 750 sh0421 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG 1960 1970 1980 1990 2000 2010 760 770 780 790 800 810 sh0421 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG 2020 2030 2040 2050 2060 2070 820 830 840 850 860 870 sh0421 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN 2080 2090 2100 2110 2120 2130 880 890 900 910 920 930 sh0421 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF 2140 2150 2160 2170 2180 2190 940 950 960 970 980 990 sh0421 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR 2200 2210 2220 2230 2240 2250 1000 1010 1020 1030 1040 1050 sh0421 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ 2260 2270 2280 2290 2300 2310 1060 1070 1080 1090 1100 1110 sh0421 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH 2320 2330 2340 2350 2360 2370 1120 1130 1140 1150 1160 1170 sh0421 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VCLDVCNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL 2380 2390 2400 2410 2420 2430 1180 1190 1200 1210 1220 1230 sh0421 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG 2440 2450 2460 2470 2480 2490 1240 1250 1260 1270 1280 1290 sh0421 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK 2500 2510 2520 2530 2540 2550 1300 1310 1320 1330 1340 1350 sh0421 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA 2560 2570 2580 2590 2600 2610 1360 1370 1380 1390 1400 1410 sh0421 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|114 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTMKPVTTTKPVTT 2620 2630 2640 2650 2660 2670 1420 1430 1440 1450 1460 1470 sh0421 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV :::::::::::::::::::::::::::::::::::::::::::::::::::.:: ::::: gi|114 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVRPAMAAKPV 2680 2690 2700 2710 2720 2730 1480 1490 1500 1510 1520 1530 sh0421 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|114 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMSREVQVFEITENSA 2740 2750 2760 2770 2780 2790 1540 1550 1560 1570 1580 1590 sh0421 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ 2800 2810 2820 2830 2840 2850 1600 1610 1620 1630 1640 1650 sh0421 VRAIYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI 2860 2870 2880 2890 2900 2910 1660 1670 1680 1690 1700 sh0421 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 2920 2930 2940 2950 2960 2970 >>gi|114584075|ref|XP_516178.2| PREDICTED: alpha 3 type (2976 aa) initn: 11438 init1: 11438 opt: 11438 Z-score: 8840.9 bits: 1649.7 E(): 0 Smith-Waterman score: 11438; 99.530% identity (99.765% similar) in 1702 aa overlap (1-1702:1275-2976) 10 20 30 sh0421 GVVQFSNDVFPEFYLKTYRSQAPVLDAIRR :::::::::::::::::::::::::::::: gi|114 GVRPDGFAHIRDFVSRIVRRLNIGPSKVRVGVVQFSNDVFPEFYLKTYRSQAPVLDAIRR 1250 1260 1270 1280 1290 1300 40 50 60 70 80 90 sh0421 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LRLRGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLVLGGKSQDDVSRFAQVIRS 1310 1320 1330 1340 1350 1360 100 110 120 130 140 150 sh0421 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SGIVSLGVGDRNIDRTELQTITNDPRLVFTVREFRELPNIEERIMNSFGPSAATPAPPGV 1370 1380 1390 1400 1410 1420 160 170 180 190 200 210 sh0421 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DTPPPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVYEDGDSIQVGLVQYNS 1430 1440 1450 1460 1470 1480 220 230 240 250 260 270 sh0421 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DPTDEFFLKDFSTKRQIIDAINKVVYKGGRHANTKVGLEHLRVNHFVPEAGSRLDQRVPQ 1490 1500 1510 1520 1530 1540 280 290 300 310 320 330 sh0421 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IAFVITGGKSVEDAQDVSLALTQRGVKVFAVGVRNIDSEEVGKIASNSATAFRVGNVQEL 1550 1560 1570 1580 1590 1600 340 350 360 370 380 390 sh0421 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SELSEQVLETLHDAMHETLCPGVTDAAKACNLDVILGFDGSRDQNVFVAQKGFESKVDAI 1610 1620 1630 1640 1650 1660 400 410 420 430 440 450 sh0421 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LNRISQMHRVSCSGGRSPTVRVSVVANTPSGPVEAFDFDEYQPEMLEKFRNMRSQHPYVL 1670 1680 1690 1700 1710 1720 460 470 480 490 500 510 sh0421 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TEDTLKVYLNKFRQSSPDSVKVVIHFTDGADGDLADLHRASENLRQEGVRALILVGLERV 1730 1740 1750 1760 1770 1780 520 530 540 550 560 570 sh0421 VNLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ANLERLMHLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKACCGVPCKCSGQRGDRGP 1790 1800 1810 1820 1830 1840 580 590 600 610 620 630 sh0421 IGSIGPKGIPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IGSIGPKGTPGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPGQRGVKGSRGFPGEKGE 1850 1860 1870 1880 1890 1900 640 650 660 670 680 690 sh0421 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VGEIGLDGLDGEDGDKGLPGSSGEKGNPGRRGDKGPRGEKGERGDVGIRGDPGNPGQDSQ 1910 1920 1930 1940 1950 1960 700 710 720 730 740 750 sh0421 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ERGPKGETGDLGPMGVPGRDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQG 1970 1980 1990 2000 2010 2020 760 770 780 790 800 810 sh0421 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TRGAQGPAGPAGPPGLIGEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIG 2030 2040 2050 2060 2070 2080 820 830 840 850 860 870 sh0421 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NRGPRGETGDDGRDGVGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGN 2090 2100 2110 2120 2130 2140 880 890 900 910 920 930 sh0421 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAF 2150 2160 2170 2180 2190 2200 940 950 960 970 980 990 sh0421 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ALDTSEGVNQDTFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKR 2210 2220 2230 2240 2250 2260 1000 1010 1020 1030 1040 1050 sh0421 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KSVLLDKIKNLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQ 2270 2280 2290 2300 2310 2320 1060 1070 1080 1090 1100 1110 sh0421 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LREAVLKLSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCH 2330 2340 2350 2360 2370 2380 1120 1130 1140 1150 1160 1170 sh0421 VCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VCLDVCNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYL 2390 2400 2410 2420 2430 2440 1180 1190 1200 1210 1220 1230 sh0421 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VRQLDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRG 2450 2460 2470 2480 2490 2500 1240 1250 1260 1270 1280 1290 sh0421 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MTQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKCK 2510 2520 2530 2540 2550 2560 1300 1310 1320 1330 1340 1350 sh0421 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSSENA 2570 2580 2590 2600 2610 2620 1360 1370 1380 1390 1400 1410 sh0421 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTT :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|114 FYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTMKPVTTTKPVTT 2630 2640 2650 2660 2670 2680 1420 1430 1440 1450 1460 1470 sh0421 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVKPATAAKPV :::::::::::::::::::::::::::::::::::::::::::::::::::.:: ::::: gi|114 TTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKTATVRPPVAVRPAMAAKPV 2690 2700 2710 2720 2730 2740 1480 1490 1500 1510 1520 1530 sh0421 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEITENSA ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|114 AAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPVVKMSREVQVFEITENSA 2750 2760 2770 2780 2790 2800 1540 1550 1560 1570 1580 1590 sh0421 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KLHWERPEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTYHVAVVCYLRSQ 2810 2820 2830 2840 2850 2860 1600 1610 1620 1630 1640 1650 sh0421 VRAIYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDICKLPKDEGTCRDFI 2870 2880 2890 2900 2910 2920 1660 1670 1680 1690 1700 sh0421 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPGVISVMGT 2930 2940 2950 2960 2970 1702 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 17:40:28 2008 done: Wed Aug 13 17:43:08 2008 Total Scan time: 1335.330 Total Display time: 2.190 Function used was FASTA [version 34.26.5 April 26, 2007]