hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18062695/chunk_1/iprscan-20090618-18062695.nocrc
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Query sequence: sh04406
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00178.13.ls Ets-domain                                     223.9    3.3e-64   1
PF00178.13.fs Ets-domain                                     222.0    1.3e-63   1
PF02198.7.fs Sterile alpha motif (SAM)/Pointed domain       169.5    1.3e-50   1
PF02198.7.ls Sterile alpha motif (SAM)/Pointed domain       171.4    2.1e-48   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02198.7.fs   1/1     102   185 ..     1    91 []   169.5  1.3e-50
PF02198.7.ls   1/1     102   185 ..     1    91 []   171.4  2.1e-48
PF00178.13.fs   1/1     383   466 ..     1    89 []   222.0  1.3e-63
PF00178.13.ls   1/1     383   466 ..     1    89 []   223.9  3.3e-64

Alignments of top-scoring domains:
PF02198.7.fs: domain 1 of 1, from 102 to 185: score 169.5, E = 1.3e-50
                   *->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewavkenkfsLepi
                      +s+f+keq+rlgip+    dPr+Wte+hV++W++wav+e  fsL+++
     sh04406   102    FSGFTKEQQRLGIPK----DPRQWTETHVRDWVMWAVNE--FSLKGV 142  

                   dfskFadmsGkeLCslskedFleraPlfvGdiLwehLqiLrkas<-*
                   df+kF +m+G++LC+l+k +Fle+aP+fvGdiLwehL+iL+k+    
     sh04406   143 DFQKF-CMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKED    185  

PF02198.7.ls: domain 1 of 1, from 102 to 185: score 171.4, E = 2.1e-48
                   *->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewavkenkfsLepi
                      +s+f+keq+rlgip+    dPr+Wte+hV++W++wav+e  fsL+++
     sh04406   102    FSGFTKEQQRLGIPK----DPRQWTETHVRDWVMWAVNE--FSLKGV 142  

                   dfskFadmsGkeLCslskedFleraPlfvGdiLwehLqiLrkas<-*
                   df+kF +m+G++LC+l+k +Fle+aP+fvGdiLwehL+iL+k+    
     sh04406   143 DFQKF-CMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKED    185  

PF00178.13.fs: domain 1 of 1, from 383 to 466: score 222.0, E = 1.3e-63
                   *->qiqLWQFLleLLtdrqdnsdfIrWtgrdkGeFKlvSKDpeeVARLWG
                      +iqLWQFLleLLtd +++++fI+Wtg d++eFKl+  Dp+eVAR+WG
     sh04406   383    PIQLWQFLLELLTD-KSCQSFISWTG-DGWEFKLS--DPDEVARRWG 425  

                   erKNNkpnMNYdKLSRALRYYYkknIirKvkGkRlvYkFvse<-*
                   +rKN kp+MNY+KLSR+LRYYY+knIi+K++GkR+vY+Fv++   
     sh04406   426 KRKN-KPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCD    466  

PF00178.13.ls: domain 1 of 1, from 383 to 466: score 223.9, E = 3.3e-64
                   *->qiqLWQFLleLLtdrqdnsdfIrWtgrdkGeFKlvSKDpeeVARLWG
                      +iqLWQFLleLLtd +++++fI+Wtg d++eFKl+  Dp+eVAR+WG
     sh04406   383    PIQLWQFLLELLTD-KSCQSFISWTG-DGWEFKLS--DPDEVARRWG 425  

                   erKNNkpnMNYdKLSRALRYYYkknIirKvkGkRlvYkFvse<-*
                   +rKN kp+MNY+KLSR+LRYYY+knIi+K++GkR+vY+Fv++   
     sh04406   426 KRKN-KPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCD    466  

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