hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18062695/chunk_1/iprscan-20090618-18062695.nocrc
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Query sequence: sh04406
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00413                                                 206.6    2.2e-57   1
SM00251                                                 171.3    9.6e-47   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00251    1/1     102   185 ..     1    90 []   171.3  9.6e-47
SM00413    1/1     383   468 ..     1    90 []   206.6  2.2e-57

Alignments of top-scoring domains:
SM00251: domain 1 of 1, from 102 to 185: score 171.3, E = 9.6e-47
                   *->pssfkkeqkrlgipadlRtdPrlWtedhVleWLewavkenkfsLepi
                      +s+f+keq+rlgip+    dPr+Wte+hV++W++wav+e  fsL+++
     sh04406   102    FSGFTKEQQRLGIPK----DPRQWTETHVRDWVMWAVNE--FSLKGV 142  

                   dfskFdmsGkeLCslskedFleraPlfvGdiLwehLqiLrkas<-*
                   df+kF+m+G++LC+l+k +Fle+aP+fvGdiLwehL+iL+k+    
     sh04406   143 DFQKFCMNGAALCALGKDCFLELAPDFVGDILWEHLEILQKED    185  

SM00413: domain 1 of 1, from 383 to 468: score 206.6, E = 2.2e-57
                   *->qiqLWqFLleLLldpennsdiIrWtdrsgGeFklvdpeeEVARLWGq
                      +iqLWqFLleLL+d+++ +++I+Wt++++ eFkl+dp+e VAR+WG+
     sh04406   383    PIQLWQFLLELLTDKSC-QSFISWTGDGW-EFKLSDPDE-VARRWGK 426  

                   rKgNkpnMNYeKLSRALRyYYkknIlrKVeGkrlvYkFvkdpl<-*
                   rK Nkp+MNYeKLSR+LRyYY+knI++K+ Gkr+vY+Fv+d+    
     sh04406   427 RK-NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQ    468  

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