hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-17551066/chunk_1/iprscan-20080813-17551066.nocrc
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Query sequence: sh04761
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          98.8    1.5e-26   3
PF00096.16.fs Zinc finger, C2H2 type                          92.9    9.1e-25   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/3     380   404 ..     1    24 []    28.9  5.8e-06
PF00096.16.ls   1/3     380   404 ..     1    24 []    30.9    4e-06
PF00096.16.fs   2/3     410   434 ..     1    24 []    33.6  4.1e-07
PF00096.16.ls   2/3     410   434 ..     1    24 []    35.6  1.6e-07
PF00096.16.fs   3/3     440   462 ..     1    24 []    30.4  2.6e-06
PF00096.16.ls   3/3     440   462 ..     1    24 []    32.3  1.5e-06

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 3, from 380 to 404: score 28.9, E = 5.8e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+C+f++C k++  +s+Lk+HlrtH   
     sh04761   380    YVCSFpGCRKTYFKSSHLKAHLRTH    404  

PF00096.16.ls: domain 1 of 3, from 380 to 404: score 30.9, E = 4e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+C+f++C k++  +s+Lk+HlrtH   
     sh04761   380    YVCSFpGCRKTYFKSSHLKAHLRTH    404  

PF00096.16.fs: domain 2 of 3, from 410 to 434: score 33.6, E = 4.1e-07
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      + C++++C+k+F r+++L rH+rtH   
     sh04761   410    FNCSWdGCDKKFARSDELSRHRRTH    434  

PF00096.16.ls: domain 2 of 3, from 410 to 434: score 35.6, E = 1.6e-07
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      + C++++C+k+F r+++L rH+rtH   
     sh04761   410    FNCSWdGCDKKFARSDELSRHRRTH    434  

PF00096.16.fs: domain 3 of 3, from 440 to 462: score 30.4, E = 2.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +C+++F r+++L++H r+H   
     sh04761   440    FVCP-VCDRRFMRSDHLTKHARRH    462  

PF00096.16.ls: domain 3 of 3, from 440 to 462: score 32.3, E = 1.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +C+++F r+++L++H r+H   
     sh04761   440    FVCP-VCDRRFMRSDHLTKHARRH    462  

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